PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0068s0008.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HB-other

Protein Properties

Length: 294aa MW: 32510.2 Da PI: 8.6532

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0068s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.1	5.5e-17	20	73	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 R++ ++ ql Le+ +++++yps + r+eL+kk+gL+e+q +vWF rR k+++ Sphfalx0068s0008.1.p 20 RRKKSPLQLGLLEKTYAEDKYPSDAVRAELSKKIGLSEKQLRVWFTHRRHKDRR 73 788899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-15	5	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	14	74	IPR001356	Homeobox domain
SMART	SM00389	2.4E-16	16	78	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-14	20	73	IPR001356	Homeobox domain
CDD	cd00086	1.40E-16	20	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-16	20	73	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASNDSSPVQ SPENQKGVVR RKKSPLQLGL LEKTYAEDKY PSDAVRAELS KKIGLSEKQL 60 RVWFTHRRHK DRRDGIDDDK LTLHGNRIKA DTDSDELPST KRGEIDLNSR EDDRSEDGYP 120 AAVLAEEQDD DVLIVKKMNG VNVDDSSYEE IEKPKATTKR KSASSLKESK KPPRNPSSPK 180 SKSISKPESF ELAAIRAVES QLNGPLREDG PPLGFEFDSP PPGAFEELTS AEVPYVANVR 240 NDNGYQSLSG RAALEGKWGK DSVLLEKKKR KVGDLYSARL PAGQSVYRGG FQV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRHKDRRD
2	266	271	KKKRKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	4e-26	homeobox-1

Link Out ? help Back to Top
Phytozome	Sphfalx0068s0008.1.p