PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0113.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 404aa    MW: 46024.9 Da    PI: 9.1963
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0113.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.42.9e-16146232286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+   v +L++++++++ +l+rg+l+ ++W e+++ +     r+++r+  qCk+k+e+++k ++ +++ e+k  +++s ++p+++++e
  Sphfalx0067s0113.3.p 146 WCSAGVACLLDLYEDKWVQLGRGNLRTTHWMEIAEELtkqCPRQLQRTGPQCKNKIEKMKKNFRTERAEEEKPGAPHS-KWPWYSRME 232
                           9999*********************************877789****************************9866776.9*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.6209.8E-221388IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF524022.03E-161483No hitNo description
CDDcd017133.65E-231788No hitNo description
PfamPF015075.8E-162094IPR002500Phosphoadenosine phosphosulphate reductase
PfamPF138372.4E-17145234No hitNo description
SMARTSM005950.0063153240IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEVVRAEFTP GIDALHKKKP IRAIFLGTRM GDPNMVGVGE FSPSTFGWPP FMRVNPILDW  60
TYRDVWAFIL ACKVPYCRLY DQGYTSIGKL HDTLPNPALL VSKDKYKPAY LMLDERLERA  120
GRVKVVSLQG RERERYKDKV ELDRVWCSAG VACLLDLYED KWVQLGRGNL RTTHWMEIAE  180
ELTKQCPRQL QRTGPQCKNK IEKMKKNFRT ERAEEEKPGA PHSKWPWYSR MERLLTGVIK  240
QVEKGGCLGH IPAAHCSSSS LDKETLLQDA WRYPSPMPQS MQGCLQSPTR VSVHKVEDEN  300
GSYSTLPPTD METWGNRPQE DNLVDNTSIS KNKRSCKQAS PSLAEAIQSL GEGLVKIECM  360
RAEMELKSRE IFLQSQIQLA SLFAKSSEEK KRKTTKHANM STN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wsi_A4e-1523124160305FAD SYNTHETASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.25e-22Trihelix family protein