PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0113.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 478aa    MW: 54343.5 Da    PI: 8.5619
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0113.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-16220306286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+   v +L++++++++ +l+rg+l+ ++W e+++ +     r+++r+  qCk+k+e+++k ++ +++ e+k  +++s ++p+++++e
  Sphfalx0067s0113.2.p 220 WCSAGVACLLDLYEDKWVQLGRGNLRTTHWMEIAEELtkqCPRQLQRTGPQCKNKIEKMKKNFRTERAEEEKPGAPHS-KWPWYSRME 306
                           9999*********************************877789****************************9866776.9*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd017133.55E-2519162No hitNo description
Gene3DG3DSA:3.40.50.6202.0E-2619162IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF524022.09E-2032157No hitNo description
PfamPF015077.8E-1694168IPR002500Phosphoadenosine phosphosulphate reductase
PfamPF138373.2E-17219308No hitNo description
SMARTSM005950.0063227314IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MCPYRFIFVR LFGSHDPEQV LLHLLRAGYA ALASGGDADA ALQYCIRTVY FKHPDAFPEI  60
DAFTLETPSL YPLDMEVVRA EFTPGIDALH KKKPIRAIFL GTRMGDPNMV GVGEFSPSTF  120
GWPPFMRVNP ILDWTYRDVW AFILACKVPY CRLYDQGYTS IGKLHDTLPN PALLVSKDKY  180
KPAYLMLDER LERAGRVKVV SLQGRERERY KDKVELDRVW CSAGVACLLD LYEDKWVQLG  240
RGNLRTTHWM EIAEELTKQC PRQLQRTGPQ CKNKIEKMKK NFRTERAEEE KPGAPHSKWP  300
WYSRMERLLT GVIKQVEKGG CLGHIPAAHC SSSSLDKETL LQDAWRYPSP MPQSMQGCLQ  360
SPTRVSVHKV EDENGSYSTL PPTDMETWGN RPQEDNLVDN TSISKNKRSC KQASPSLAEA  420
IQSLGEGLVK IECMRAEMEL KSREIFLQSQ IQLASLFAKS SEEKKRKTTK HANMSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wsi_A3e-1848198104305FAD SYNTHETASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.26e-22Trihelix family protein