PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0093.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 469aa    MW: 51791.9 Da    PI: 7.315
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-072064341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          +r C+ ++ ++++++C  ++ ++C+ C  + H+       H++v 
  Sphfalx0067s0093.1.p 20 ARACDVCGVHRARWYCAADEAYICHPCDAKVHEAnslasrHNRVL 64
                          578*****999*********************7678888888775 PP
2CCT70.15.6e-24413457145
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                           Rea+llRYkeKr+ R+F+KkirYe+RK +Ae+RpR+KGrFvk+++
  Sphfalx0067s0093.1.p 413 REASLLRYKEKRRARLFSKKIRYEVRKLNAEQRPRMKGRFVKRTQ 457
                           9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6131865IPR000315B-box-type zinc finger
SMARTSM003363.0E-101865IPR000315B-box-type zinc finger
PfamPF006431.0E-52163IPR000315B-box-type zinc finger
CDDcd000215.21E-82365No hitNo description
PROSITE profilePS5101715.844413455IPR010402CCT domain
PfamPF062035.7E-18413455IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMNCKVGSSA SGMAVAAKAA RACDVCGVHR ARWYCAADEA YICHPCDAKV HEANSLASRH  60
NRVLLSPHNP PKHKQQQQQH RHRHEHQAAG DSQGMMMNSA QKISRRSNPG MRISSPNLNL  120
FATTGKIPAE RASFTKTSGR KQELYAKVKV EPAGGGDEYM GGKGSNWQAG VHEVPAFVSI  180
FQDPLPEFST SKVVDDTQNH HVHHDDELSK EEEQEEVVPD LFPRHFYFDA TLGPLKEDSP  240
GGCTFLGEEI PGMDGYENSY KYMEPDPSSL DSKAHHAPYA EGSLSCAFRP PETDNFMGGA  300
GAGGCRQKKK QEAVEDLVGA TYPLEEGLTA TEAAAAARAC HVPSLKLNYK EVLSACSDQS  360
LWTAHDKHPQ TVPDDPIADA VGNMDLGFVP DLNFGPQEMA VTRDDCYSGR GRREASLLRY  420
KEKRRARLFS KKIRYEVRKL NAEQRPRMKG RFVKRTQWST PEDGFGSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423439RRARLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.16e-20B-box type zinc finger protein with CCT domain