PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0067s0042.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1038aa MW: 116388 Da PI: 5.2535

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0067s0042.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1.1e-07	278	319	4	43
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksr 43 W+ eE++ l++av+++G+g+Wk I + +R+ q+k++ Sphfalx0067s0042.2.p 278 WSGEEEDALKRAVQRFGPGSWKEIKDSEPslAKRSVVQIKEK 319 *****************************9988999999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.562	270	324	IPR017877	Myb-like domain
SMART	SM00717	7.4E-4	274	326	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-8	274	319	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.64E-7	274	323	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-7	277	319	IPR001005	SANT/Myb domain
CDD	cd11660	5.06E-12	278	324	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence Send to blast
MAKLVLTEEE RVVDQELGYP RGYAKLCRHA LAGMIDGFSM PFSAGPPQRF VPYSLAPVDI 60 AKLKEWDALF PAVAEVDKEA PNSHKYAEEL WEQLDHLGNA GFDPAKFRVD KYGNVLYWSA 120 DPSSPLSWEV DHWFPHSRGG QTLASNLQIV QWQTRQRKRN RLEFLVPWWD LQHGVSINQF 180 LSAFASKNSE FRRRSFALFF SGGEDENVVR QHVGDYGPWP PQFREKKIYC GLAGAAIVSL 240 SKENYNDDGF FSSHSSPSPA NFKLTSLPGA PPAQQQLWSG EEEDALKRAV QRFGPGSWKE 300 IKDSEPSLAK RSVVQIKEKD RSMRGDRQFG KENNSAVCWG DYDRQTTITN TMQKELRLKI 360 MREEGKREKS QEIKQLEETV QTLKEQNEKE RVALMELEGV LSKQKQRIEK QRRWAETQSS 420 YRLCLERMIR DTMHQSISYK EQARLNQAAC NALMARLDCQ KTTCETAEKD LLQRYSQRQA 480 LATLASMELS ATEENKLLKG RDIVDVSSCL SLITTNEGHI LSPDKAPPEQ EALELCSESE 540 DGDAYDAHST KIKNDGSMES LKPQQNQRCF QESHSGKTTD IISGQVEKKL AVLKSSYYID 600 ENSNLKGNGG EGNESDNSEC NEYDKVHEVH RTEVTDEAFS NGRCLTRDCS SGVKTENKSS 660 NGFQGSVSSS IGEEGFDLRL ECCEKDVLMV ETKTFVQGER GTAADLQNRG EIDDLQQSST 720 TTDVEETHHQ KSEAVHENEP MTLEDESIYK IGKSNIDKWL HVLLEDAASP RISIDDASLL 780 HPLDSPSSGQ PPLSPALSSL SMAALRGSIE LDEGRDIFLR KEDAASKSKG RWGGLMRKLS 840 VKHLDELYEE EPPTPQRDNR NNLRNALKSF EDFKMHEDIQ DRQEAPALVA HVPEGNGGAT 900 PVMLQNIPES VKNWPEGGIR AKGGAEWYKH TNTKTTTEAT TVTADEQQLH NSKSTQGESV 960 NAAEAAPPKF VEAGELDGDE ECDSTTDSTN HQFMDPNDGA SKHRLRASLK ACTSKWRRAV 1020 KKLDSKPLQE GCIPLQV*

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence Send to blast

MAKLVLTEEE RVVDQELGYP RGYAKLCRHA LAGMIDGFSM PFSAGPPQRF VPYSLAPVDI  60
AKLKEWDALF PAVAEVDKEA PNSHKYAEEL WEQLDHLGNA GFDPAKFRVD KYGNVLYWSA  120
DPSSPLSWEV DHWFPHSRGG QTLASNLQIV QWQTRQRKRN RLEFLVPWWD LQHGVSINQF  180
LSAFASKNSE FRRRSFALFF SGGEDENVVR QHVGDYGPWP PQFREKKIYC GLAGAAIVSL  240
SKENYNDDGF FSSHSSPSPA NFKLTSLPGA PPAQQQLWSG EEEDALKRAV QRFGPGSWKE  300
IKDSEPSLAK RSVVQIKEKD RSMRGDRQFG KENNSAVCWG DYDRQTTITN TMQKELRLKI  360
MREEGKREKS QEIKQLEETV QTLKEQNEKE RVALMELEGV LSKQKQRIEK QRRWAETQSS  420
YRLCLERMIR DTMHQSISYK EQARLNQAAC NALMARLDCQ KTTCETAEKD LLQRYSQRQA  480
LATLASMELS ATEENKLLKG RDIVDVSSCL SLITTNEGHI LSPDKAPPEQ EALELCSESE  540
DGDAYDAHST KIKNDGSMES LKPQQNQRCF QESHSGKTTD IISGQVEKKL AVLKSSYYID  600
ENSNLKGNGG EGNESDNSEC NEYDKVHEVH RTEVTDEAFS NGRCLTRDCS SGVKTENKSS  660
NGFQGSVSSS IGEEGFDLRL ECCEKDVLMV ETKTFVQGER GTAADLQNRG EIDDLQQSST  720
TTDVEETHHQ KSEAVHENEP MTLEDESIYK IGKSNIDKWL HVLLEDAASP RISIDDASLL  780
HPLDSPSSGQ PPLSPALSSL SMAALRGSIE LDEGRDIFLR KEDAASKSKG RWGGLMRKLS  840
VKHLDELYEE EPPTPQRDNR NNLRNALKSF EDFKMHEDIQ DRQEAPALVA HVPEGNGGAT  900
PVMLQNIPES VKNWPEGGIR AKGGAEWYKH TNTKTTTEAT TVTADEQQLH NSKSTQGESV  960
NAAEAAPPKF VEAGELDGDE ECDSTTDSTN HQFMDPNDGA SKHRLRASLK ACTSKWRRAV  1020
KKLDSKPLQE GCIPLQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382186.1	0.0	uncharacterized protein LOC112285515
TrEMBL	A0A2K1K7E4	0.0	A0A2K1K7E4_PHYPA; Uncharacterized protein
STRING	PP1S114_23V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0067s0042.2.p