PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0065s0049.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 841aa MW: 94394.2 Da PI: 5.1303

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0065s0049.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	278	320	3	43
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksr 43 W+ eE++ l++av+++G+g+Wk I + + +R+ q++++ Sphfalx0065s0049.2.p 278 IWSGEEEDALKRAVQRFGTGSWKEIKESEPslMNRSIVQIREK 320 5*****************************9999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.646	271	329	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-8	274	324	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-8	274	320	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-4	275	327	IPR001005	SANT/Myb domain
CDD	cd11660	5.49E-12	277	325	No hit	No description
Pfam	PF00249	5.3E-8	279	320	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MAQLVLSEEE RVVDQELGYP RCYGKLCRRA FSGADVGFFT PFIAGPPQRF VPYSPPAEDL 60 AKLKEWDTVF PAVAEVEKEA PNAHKHAEEL WEQLDHLGNA GFDPAKFRVD KYGNVLYWSA 120 DPSSPLSWEV DHWFPLSRGG RTLASNLQIV QWQARQRKKN RLEFLVPWWD LQHGVSINQF 180 LSAFASKNAE FRRRSFALFF AGGEDENIVR QHVGDCGPWP PQFREKKIHC GLAGAAIVSI 240 AKDNDEATVL LSSNCSVQTA ASNSELASVP GTTLLRRIWS GEEEDALKRA VQRFGTGSWK 300 EIKESEPSLM NRSIVQIREK ERSMRGDRQF GKENNSTAWC RDYDRQTGIT NAMQKELRLK 360 VIREEGKQEK SEEILQLEET LQTLKEQNEK ERLALVELEG VLSKQKQRIE KQRRWAETQS 420 SYRLCLERMI RDTMHQSISY KEQARLNQAA CNALMARLDC QKMTCETAEK DLLQRYSQRQ 480 ALAALASTEF IGTDHNKSLK GRDIVDVSSC LSLLTTSEGQ VLSPDKELLE QDTIGLCSES 540 EDGDIANAHR TNINHRGSVD PMKAQQKQEH FEETHSDKEN AGGLQNDAGP RKEIAVPPTL 600 SQEEKMLAPL QSFDLSAQAQ CSSLKNTKQG IQEEEGHDTD GLKLQECHKF HEVHEAEVTE 660 PQASDNEKDL AKNFSNVKTE CSNSSHGFQE KPLDPLLECS EKDVIMVETT KSMQAERCSN 720 ADPQSNGNLA DSQASTTSAM ETTYHHNKLE AAAHEDDEFI TSENERIHEI GKSNLDKWLH 780 VLFEDAGSPR ISTDDASQIQ PAHNSILGQQ PPLSPALSNI SMAALRGSIE LDGGRDNHEG 840 *

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MAQLVLSEEE RVVDQELGYP RCYGKLCRRA FSGADVGFFT PFIAGPPQRF VPYSPPAEDL  60
AKLKEWDTVF PAVAEVEKEA PNAHKHAEEL WEQLDHLGNA GFDPAKFRVD KYGNVLYWSA  120
DPSSPLSWEV DHWFPLSRGG RTLASNLQIV QWQARQRKKN RLEFLVPWWD LQHGVSINQF  180
LSAFASKNAE FRRRSFALFF AGGEDENIVR QHVGDCGPWP PQFREKKIHC GLAGAAIVSI  240
AKDNDEATVL LSSNCSVQTA ASNSELASVP GTTLLRRIWS GEEEDALKRA VQRFGTGSWK  300
EIKESEPSLM NRSIVQIREK ERSMRGDRQF GKENNSTAWC RDYDRQTGIT NAMQKELRLK  360
VIREEGKQEK SEEILQLEET LQTLKEQNEK ERLALVELEG VLSKQKQRIE KQRRWAETQS  420
SYRLCLERMI RDTMHQSISY KEQARLNQAA CNALMARLDC QKMTCETAEK DLLQRYSQRQ  480
ALAALASTEF IGTDHNKSLK GRDIVDVSSC LSLLTTSEGQ VLSPDKELLE QDTIGLCSES  540
EDGDIANAHR TNINHRGSVD PMKAQQKQEH FEETHSDKEN AGGLQNDAGP RKEIAVPPTL  600
SQEEKMLAPL QSFDLSAQAQ CSSLKNTKQG IQEEEGHDTD GLKLQECHKF HEVHEAEVTE  660
PQASDNEKDL AKNFSNVKTE CSNSSHGFQE KPLDPLLECS EKDVIMVETT KSMQAERCSN  720
ADPQSNGNLA DSQASTTSAM ETTYHHNKLE AAAHEDDEFI TSENERIHEI GKSNLDKWLH  780
VLFEDAGSPR ISTDDASQIQ PAHNSILGQQ PPLSPALSNI SMAALRGSIE LDGGRDNHEG  840
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382186.1	0.0	uncharacterized protein LOC112285515
TrEMBL	A0A2K1K7E4	0.0	A0A2K1K7E4_PHYPA; Uncharacterized protein
STRING	PP1S114_23V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0065s0049.2.p