PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0064s0126.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 333aa MW: 36681.5 Da PI: 8.3347 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.4e-18 | 188 | 242 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k Sphfalx0064s0126.1.p 188 RKKLRLSKEQSALLEESFKHHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 242 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.4e-39 | 188 | 277 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL ke +eLr Sphfalx0064s0126.1.p 188 RKKLRLSKEQSALLEESFKHHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTIENRRLLKELQELR- 275 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 ++ Sphfalx0064s0126.1.p 276 AI 277 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.25E-18 | 175 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 175 | 243 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 184 | 244 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-15 | 186 | 248 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 188 | 242 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-15 | 188 | 245 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 219 | 242 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.0E-21 | 244 | 287 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.0E-10 | 244 | 277 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MLLADGRERF KEDMQTMRLM APDCGASLGL NVDIGKIVQR GHENSGPGRR LPVQLDLLPL 60 RPSHSASGTP EPSSLITKNM FSWQQQQPLR NGSWTNSGSG CDDGEVETFS SGGQGGASSP 120 RGIDMNQLPL TTEFDDAVLS SPSSIGMMKR EREKMHESFD LERERGACDL SSRGGGGSDD 180 EDGGAASRKK LRLSKEQSAL LEESFKHHST LNPKQKNALA KQLNLRPRQV EVWFQNRRAR 240 TKLKQTEVDC ELLKRCCETL TIENRRLLKE LQELRAIKAA PSRVIAHDFY TPLPAATLTM 300 CPSCERVATV DNRSITFSKP GYSHLSQAPT AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 192 | SRKKLRL |
2 | 236 | 244 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379716.1 | 1e-134 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46602 | 1e-64 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2R6WPH0 | 1e-133 | A0A2R6WPH0_MARPO; Uncharacterized protein | ||||
STRING | PP1S42_217V6.1 | 1e-133 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-59 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0064s0126.1.p |
Publications ? help Back to Top | |||
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