PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0064s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 415aa MW: 43497.9 Da PI: 7.4825 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 63 | 85 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++ C+yG++C+F Hgp Sphfalx0064s0035.1.p 63 ECRRYNSPEGCPYGSSCRFKHGP 85 6999999999***********96 PP | |||||||
2 | zf-CCCH | 17.5 | 7.2e-06 | 101 | 124 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt++C f+ t C+yG+ C+F H Sphfalx0064s0035.1.p 101 KTKPCTKFFSTSGCPYGEGCHFLH 124 9*********************** PP | |||||||
3 | zf-CCCH | 29.2 | 1.6e-09 | 202 | 228 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f+ C++G+rC+FaHg+ Sphfalx0064s0035.1.p 202 FKTRLCNRFSMPDGCRFGERCHFAHGE 228 79***********************96 PP | |||||||
4 | zf-CCCH | 26.3 | 1.3e-08 | 379 | 403 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC ++ + GtC + d C+FaHg Sphfalx0064s0035.1.p 379 FKTKLCENYTQ-GTCTFADHCHFAHG 403 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.756 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.88 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-5 | 61 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-6 | 64 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.465 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-6 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-9 | 101 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 202 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 202 | 233 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 202 | 232 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.11E-13 | 284 | 365 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.4E-12 | 289 | 359 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.886 | 290 | 354 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 8.4E-15 | 291 | 360 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.33E-13 | 294 | 354 | No hit | No description |
Pfam | PF00013 | 5.6E-10 | 296 | 355 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 376 | 409 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-8 | 377 | 408 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.887 | 378 | 405 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 378 | 404 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-6 | 379 | 403 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGSYEPALKK SRLAYLDTGA PGTVNLAAMS NGNHGVALGL HATTAAAALD LQAMSMQING 60 DQECRRYNSP EGCPYGSSCR FKHGPTDDRD LGQPVSALGS KTKPCTKFFS TSGCPYGEGC 120 HFLHYVPGGI AALPGLMMPM TASAAGTGTC LYSATSGGGG WGPGLNNLGT EISTGGGPPG 180 SLYACSTAAA AADPATTSVG SFKTRLCNRF SMPDGCRFGE RCHFAHGESD LRPSNGISSL 240 HSNGFEYMAS AEGYANGAGT LMMTTPVPSA LYYGEPTPPG VTATTNFCAT SNTKMGIEAV 300 FAGAIIGKAG ANVKQISRLT GAKLSIREHE TDVNMRNVEM EGTYEQIEHA TEMVRQFLQQ 360 RAEVTVPQRA AVALSSHNFK TKLCENYTQG TCTFADHCHF AHGVHELRST NRLR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396650.1 | 1e-145 | zinc finger CCCH domain-containing protein 14-like isoform X3 | ||||
TrEMBL | A0A2K1JEE5 | 1e-144 | A0A2K1JEE5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S66_196V6.1 | 1e-144 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-39 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0064s0035.1.p |