PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0064s0019.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 378aa MW: 42361.2 Da PI: 8.5589

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0064s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.6	2.2e-08	8	33	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C+ +++ G+C++ +C+FaHg+ Sphfalx0064s0019.1.p 8 YKTKMCSLYMQRGYCPR-QSCSFAHGE 33 9**************.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-13	6	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.69E-7	6	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.103	7	34	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0031	7	33	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-5	8	33	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MAYARDLYKT KMCSLYMQRG YCPRQSCSFA HGESELRKVP GRFDNGGDLR NAVDHRHSPS 60 YWRRSPGRDE RGRDWHENGS PHHDRGHTQS KSPAKRRRSV SCSPQKSPEY KKRDTKKHPD 120 TTEPHLSDVS GPIDGAEDVA VDEANGKAGS QSISTSSQEA LEEQLQEVSS FNKTLLAQKV 180 KLEHSLEKKV LETTELSDKI VMLETKLDSI KDTCKGLASR TKKFVKVYKG FFRAQEELKR 240 SQAKLMRLVD DISEDNGPML DTDVEYLDIN TTSYEDPLCE IPTNNQANHR PTAAGSHLQR 300 QENDTETGNR LSSSIEEPLL TESKQHKPTA AQQERRRALV QKALKQGSLS LKTGDGRDGI 360 ATDHKMSSVV SLNGELK*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MAYARDLYKT KMCSLYMQRG YCPRQSCSFA HGESELRKVP GRFDNGGDLR NAVDHRHSPS  60
YWRRSPGRDE RGRDWHENGS PHHDRGHTQS KSPAKRRRSV SCSPQKSPEY KKRDTKKHPD  120
TTEPHLSDVS GPIDGAEDVA VDEANGKAGS QSISTSSQEA LEEQLQEVSS FNKTLLAQKV  180
KLEHSLEKKV LETTELSDKI VMLETKLDSI KDTCKGLASR TKKFVKVYKG FFRAQEELKR  240
SQAKLMRLVD DISEDNGPML DTDVEYLDIN TTSYEDPLCE IPTNNQANHR PTAAGSHLQR  300
QENDTETGNR LSSSIEEPLL TESKQHKPTA AQQERRRALV QKALKQGSLS LKTGDGRDGI  360
ATDHKMSSVV SLNGELK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	6e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0064s0019.1.p