PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0063s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 460aa MW: 50307.9 Da PI: 7.1758 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.8e-06 | 295 | 314 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ Sphfalx0063s0069.1.p 295 FSCHVCSKTFNRYNNLQMHM 314 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-5 | 288 | 317 | No hit | No description |
SMART | SM00355 | 0.23 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 295 | 322 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 295 | 314 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 297 | 317 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 342 | 374 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.49E-5 | 360 | 399 | No hit | No description |
SMART | SM00355 | 110 | 379 | 399 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MTWRRSHEQG ASVAVPRSLS SIPHAHPVPP LCHEWCNRHL AALQPHDVSS VGWPTVAAAI 60 PFTDMSLRPG GTTAAAASSS NSQISTGPDS PRSTSTVSRF HPLEQPQHCS SLQQHSNQHF 120 FEQASKLYQR QRSCSVSEAA GPSPPPHLRR ALPFLSLSPP TADDEVPDEE EEEDLQQLEK 180 SYPGRTAAAV QQLSAPAESN AACQEYSDDN DVTVALHIGP PSSSTHDAAC MEAAGAKRHD 240 GTSGLGGYEL ALPAADAEST KGSHHHIAER VGRLLLEGQY WIPTSAQILV GPTQFSCHVC 300 SKTFNRYNNL QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAQGCRN NIEHPRSKPL 360 KDFRTLQTHY KRKHGIKPFM CRKCCKTFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK 420 DHIRAFGNGH AAHGGGDSCE DEDDPSVMSE DDADPDISG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396645.1 | 1e-135 | zinc finger protein WIP6-like | ||||
Swissprot | Q9SVY1 | 1e-110 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2K1JDJ6 | 1e-134 | A0A2K1JDJ6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S203_59V6.1 | 1e-131 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-105 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0063s0069.1.p |
Publications ? help Back to Top | |||
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