PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0063s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 17793.8 Da PI: 5.1702 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 49.2 | 1.3e-15 | 13 | 114 | 7 | 95 |
NF-YB 7 flPianvsrimkkvlPana..k...........iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 lP anv r++k+ l + a + kda e + fi f+++ a++ c++ kr+tin+dd+l a+ +l f ++ ep Sphfalx0063s0006.1.p 13 GLPQANVKRVVKEKLAELAheHfdddrkekdvlVNKDALLAFSESAKIFIHFLSATANEICRESKRQTINADDVLKAVEELDFPEFCEP 101 589999999999998764411311111122333556666677899999***************************************** PP NF-YB 83 lkvylkkyreleg 95 lk+ l+ +r+ + Sphfalx0063s0006.1.p 102 LKAALAGFRKEND 114 *********8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-32 | 13 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.43E-25 | 14 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-10 | 43 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MAGRAHADAG SEGLPQANVK RVVKEKLAEL AHEHFDDDRK EKDVLVNKDA LLAFSESAKI 60 FIHFLSATAN EICRESKRQT INADDVLKAV EELDFPEFCE PLKAALAGFR KENDAKKQDS 120 KRKEVARKRK AGDSNGADGD IHVNGRLDEA VTMAEDEGFT D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366136.1 | 6e-54 | DNA polymerase epsilon subunit 3-like | ||||
Refseq | XP_024366137.1 | 6e-54 | DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A9TF10 | 1e-52 | A9TF10_PHYPA; Predicted protein | ||||
STRING | PP1S217_34V6.1 | 2e-53 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-33 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0063s0006.1.p |