PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0062s0078.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 728aa MW: 78805.6 Da PI: 5.1887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0062s0078.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	535	580	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++ N+++++L +l+P kK + +++L +A++YI++L+ Sphfalx0062s0078.1.p 535 HKLAERSRRNNFNEKLHTLCTLIPII-----KKKDRVSVLAHAIDYIHQLK 580 99*********************7.....699*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.446	530	579	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-14	533	594	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-8	535	579	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-10	535	584	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-13	535	589	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	536	585	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MQGVTPQLDS RMSEDQISQK RLKALVQSLE WTYGVVWKLS SSDGLLEWVH GWFNPLSAES 60 AQTLMPQFYS IFKDPCALGF SALALQQGSP VWWTSNMAEI RTDKYKAQFL REAHIQTVVC 120 IPGLGADGMY CTELATTDLV PETDALMNSL QDYVSTSVKP HMLGVIESPL PSSLSPLNPG 180 GQGDLSSDQF SSLGVTCPLN PGTPSAQITS PGSSGTGFNP SLNVNRYAPP GDFNECLGNS 240 GTVLRDEEPY FLWTAPGNQS LFFDYGFPSG LFDEIDIDVD VEKTMFNSLE SKKATKSSSN 300 PDMMTSCKWD SDTLDSKEVE LKAMTMPEFT ASCVEHSSCK KSVSLPATNA QDLLDLLAGN 360 KPCDPPATKS TSTVSRETDK QFSSFSHLLE ASCSYSTPEA PLKTSDQATS SIDPFYLQQS 420 TDMSFIKDLV GQPNNVTNLL MDVHSCKPAL PASNFRHVHE SLFKRRICSK LAMHGGDSRS 480 SQQSLLQQWT EKIVPMIKEA QKLADQGLTR SCGTLSSGEC GRMPNPAHDE AAHVHKLAER 540 SRRNNFNEKL HTLCTLIPII KKKDRVSVLA HAIDYIHQLK TQVAHLEEAG GPLSKQGKGT 600 DHSQSPASTI SIQAQEDSTL DVSSSLGSVR KVAVCPDNGG VVINVEANNQ TDTLIRILMA 660 SSDLGLEVRS VNSTCINNEV HVAVNAVAGG VHGMSSMNVQ EALQRVLIPS NTSLSTVTSD 720 MDHLGDG*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MQGVTPQLDS RMSEDQISQK RLKALVQSLE WTYGVVWKLS SSDGLLEWVH GWFNPLSAES  60
AQTLMPQFYS IFKDPCALGF SALALQQGSP VWWTSNMAEI RTDKYKAQFL REAHIQTVVC  120
IPGLGADGMY CTELATTDLV PETDALMNSL QDYVSTSVKP HMLGVIESPL PSSLSPLNPG  180
GQGDLSSDQF SSLGVTCPLN PGTPSAQITS PGSSGTGFNP SLNVNRYAPP GDFNECLGNS  240
GTVLRDEEPY FLWTAPGNQS LFFDYGFPSG LFDEIDIDVD VEKTMFNSLE SKKATKSSSN  300
PDMMTSCKWD SDTLDSKEVE LKAMTMPEFT ASCVEHSSCK KSVSLPATNA QDLLDLLAGN  360
KPCDPPATKS TSTVSRETDK QFSSFSHLLE ASCSYSTPEA PLKTSDQATS SIDPFYLQQS  420
TDMSFIKDLV GQPNNVTNLL MDVHSCKPAL PASNFRHVHE SLFKRRICSK LAMHGGDSRS  480
SQQSLLQQWT EKIVPMIKEA QKLADQGLTR SCGTLSSGEC GRMPNPAHDE AAHVHKLAER  540
SRRNNFNEKL HTLCTLIPII KKKDRVSVLA HAIDYIHQLK TQVAHLEEAG GPLSKQGKGT  600
DHSQSPASTI SIQAQEDSTL DVSSSLGSVR KVAVCPDNGG VVINVEANNQ TDTLIRILMA  660
SSDLGLEVRS VNSTCINNEV HVAVNAVAGG VHGMSSMNVQ EALQRVLIPS NTSLSTVTSD  720
MDHLGDG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0062s0078.1.p