PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0062s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 178aa MW: 19392 Da PI: 4.0488 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 53.5 | 5.2e-17 | 80 | 162 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P++r++k++k+d d++ + ea l++ka elf+ ++ ++ + +e++r+++ sd+++ v +t+ +fl d vp++ Sphfalx0062s0022.1.p 80 FSLAFPISRVRKLVKSDGDIQWVGVEAGFLIAKAAELFLEKFVEDAFDRMQESHRNSITYSDLSSHVVSTERLEFLSDFVPEK 162 56689***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-21 | 84 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-10 | 84 | 144 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.53E-17 | 93 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
METSFTESDS EESGRELPSS AAAEEEEEEE EKTENGGYSH EENGNSNSND EDGDGDDGTT 60 TMSRSFVVGG GRTSKSASVF SLAFPISRVR KLVKSDGDIQ WVGVEAGFLI AKAAELFLEK 120 FVEDAFDRMQ ESHRNSITYS DLSSHVVSTE RLEFLSDFVP EKVLVSSILP SKALMEN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400121.1 | 2e-47 | putative transcription factor C16C4.22 | ||||
TrEMBL | A0A2K1J3J8 | 4e-46 | A0A2K1J3J8_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9TUW3 | 3e-44 | A9TUW3_PHYPA; Predicted protein | ||||
STRING | PP1S329_24V6.1 | 6e-47 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 7e-18 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0062s0022.1.p |