PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0061s0045.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 284aa    MW: 30948.1 Da    PI: 4.8458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0061s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1953102255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa ++l+g
  Sphfalx0061s0045.1.p  53 SYKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVLALRG 102
                           69****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.60E-3052112No hitNo description
PROSITE profilePS5103223.35453110IPR001471AP2/ERF domain
PfamPF008473.3E-1253102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3153111IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2153110IPR016177DNA-binding domain
SMARTSM003805.6E-3753116IPR001471AP2/ERF domain
PRINTSPR003671.5E-95465IPR001471AP2/ERF domain
PRINTSPR003671.5E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMVNSASPVT GKRIEGSDLA GAPLKRKSAG SPGSIQKRSC SSSPSSTNRG GKSYKGVRMR  60
TWGKWVSEIR EPNKRSRIWL GSFPTAEMAA RAYDAAVLAL RGPDAPLNFP ETPPVLQARD  120
WSSAAHMSPR SIQAAAAAAA ASAVPPAAPL HIPQSHQQTS SSFYSSGASC CSGEEEEEDQ  180
EELHKKYPDR YNQLASLKDD ENLNLAAESQ SGAPQSDQQS RVQSMPEAQQ PIAMEWIESQ  240
FAGPFQDFEE LGYFHHQSVL REIEEDAEDD DSESAPFLWS YLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1651110363ATERF1
3gcc_A6e-1651110363ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-21cooperatively regulated by ethylene and jasmonate 1