PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0060s0080.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1036aa MW: 114095 Da PI: 6.6754

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0060s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.7	1.9e-39	183	259	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+akeyhrrhkvCe+hska +v+++g+ qrfCqqCsrfh lsefD++krsCrrrLa+h errrk+q Sphfalx0060s0080.1.p 183 MCQVEGCKADLSTAKEYHRRHKVCEFHSKARNVVAHGRVQRFCQQCSRFHVLSEFDDGKRSCRRRLAGHKERRRKSQ 259 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-35	176	245	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.094	181	258	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-37	182	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-30	184	257	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MTSSANTSDH EGDPNWTTVN YGHLEAWGNL HPSTSATKNV LGSSGIPGLA PTGRAGLQSN 60 LLSSFAHQRY LESYGGMQHL NPNMVKREPG SQAGNQHSIG VSMNGALFFM ILYDLMQRAL 120 TKTSHATTVV AQDNARSYTE RATVATQDKA RSYTEQASGS DFIPFVEGRL EESAGSPGSQ 180 VPMCQVEGCK ADLSTAKEYH RRHKVCEFHS KARNVVAHGR VQRFCQQCSR FHVLSEFDDG 240 KRSCRRRLAG HKERRRKSQL RALTWDAAVE CIWMKGEEDS DLSGSPASDS KSMLSHPKNC 300 GSLSLVSLDD SDEQPASAKN NLQLNTPAAT FGRVPKEDQH SSQPGMQQTS SQPRGLERTI 360 WRNFHDSETA SVAPVSVEDV RKAELSTKDK VGFVTRKAKR AAETALAHTA FRQAYEERYL 420 QEKDQHQETS GLESPSYSRI GFPGPTRVTD GHLKQENQLS TIGIGDTSEN CFQTLLPEME 480 NDSIFTMGRK GKFEGANSVE FLFEQAEDMS KVVGVGLQWS KVVVTKQFGV VVQHIGEHLW 540 SDLWKETSFS PMRIPILKPP TKLSMFNLTP ETSSKRFGVG LVGSRFQSRC VYVEDNEKQT 600 SEMFPFIFEL AEKMGLSENA KESNFQHPSR ISSEAVEGEK NDHGGPLLET MEGGETDQGD 660 TSSEPMDPMD VGESSQGGNS GEPMEGLESG QGGPSSGPTE VGGQSDQQSS PFQLRFQSFQ 720 AKGPQDSNEN KSLTVIVIPE VGGTFYEGLS NQQVQPDCRI KFAAIAPWLK FKFEILGGER 780 KITTMTKTAC DLGGGELQLH EDWNLGYCHD NITISLTCAD PQAVRISARS VVATNDTKRI 840 MTETITGSTS RANQVSGQAN VQVQIPVVPI GVQAQGTLDV TDTIVNSRVL VIIIKSSKTQ 900 SAGFDVNEVG CASSLVFSFV YSEKIVDVMA RGQRHFVDAG ISKTLCPPII GKWIPLDRED 960 ACLYTFKTER NIYSIRSLRR SHAERKEPIS FMQQRYEVPF FINHAMSHIH CYENTLLQGP 1020 GLQTLPKVVT KFPKF*

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MTSSANTSDH EGDPNWTTVN YGHLEAWGNL HPSTSATKNV LGSSGIPGLA PTGRAGLQSN  60
LLSSFAHQRY LESYGGMQHL NPNMVKREPG SQAGNQHSIG VSMNGALFFM ILYDLMQRAL  120
TKTSHATTVV AQDNARSYTE RATVATQDKA RSYTEQASGS DFIPFVEGRL EESAGSPGSQ  180
VPMCQVEGCK ADLSTAKEYH RRHKVCEFHS KARNVVAHGR VQRFCQQCSR FHVLSEFDDG  240
KRSCRRRLAG HKERRRKSQL RALTWDAAVE CIWMKGEEDS DLSGSPASDS KSMLSHPKNC  300
GSLSLVSLDD SDEQPASAKN NLQLNTPAAT FGRVPKEDQH SSQPGMQQTS SQPRGLERTI  360
WRNFHDSETA SVAPVSVEDV RKAELSTKDK VGFVTRKAKR AAETALAHTA FRQAYEERYL  420
QEKDQHQETS GLESPSYSRI GFPGPTRVTD GHLKQENQLS TIGIGDTSEN CFQTLLPEME  480
NDSIFTMGRK GKFEGANSVE FLFEQAEDMS KVVGVGLQWS KVVVTKQFGV VVQHIGEHLW  540
SDLWKETSFS PMRIPILKPP TKLSMFNLTP ETSSKRFGVG LVGSRFQSRC VYVEDNEKQT  600
SEMFPFIFEL AEKMGLSENA KESNFQHPSR ISSEAVEGEK NDHGGPLLET MEGGETDQGD  660
TSSEPMDPMD VGESSQGGNS GEPMEGLESG QGGPSSGPTE VGGQSDQQSS PFQLRFQSFQ  720
AKGPQDSNEN KSLTVIVIPE VGGTFYEGLS NQQVQPDCRI KFAAIAPWLK FKFEILGGER  780
KITTMTKTAC DLGGGELQLH EDWNLGYCHD NITISLTCAD PQAVRISARS VVATNDTKRI  840
MTETITGSTS RANQVSGQAN VQVQIPVVPI GVQAQGTLDV TDTIVNSRVL VIIIKSSKTQ  900
SAGFDVNEVG CASSLVFSFV YSEKIVDVMA RGQRHFVDAG ISKTLCPPII GKWIPLDRED  960
ACLYTFKTER NIYSIRSLRR SHAERKEPIS FMQQRYEVPF FINHAMSHIH CYENTLLQGP  1020
GLQTLPKVVT KFPKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	173	257	2	84	squamosa promoter binding protein-like 4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	9e-37	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Sphfalx0060s0080.1.p