PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0059s0083.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 409aa    MW: 46608.2 Da    PI: 6.3161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0059s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066104126323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           C+   Cg++F+    L++H+  H
  Sphfalx0059s0083.1.p 104 CSfeGCGRVFPEMPALRKHLHIH 126
                           88889**************9988 PP
2zf-C2H213.90.00015131155123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y C+   Cgk F ++s LkrH  +H
  Sphfalx0059s0083.1.p 131 YICHhnGCGKGFMDSSKLKRHFLSH 155
                           89*******************9888 PP
3zf-C2H2232e-07161185123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++Cp   Cgk Fs   nL++H+rtH
  Sphfalx0059s0083.1.p 161 FVCPmeGCGKAFSLDFNLRSHMRTH 185
                           89**********************9 PP
4zf-C2H219.13.5e-06191216123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           + Cp  dCgk++ + + L+ H+r+ H
  Sphfalx0059s0083.1.p 191 HACPyeDCGKRYAHEYKLRAHMRSyH 216
                           679********************999 PP
5zf-C2H212.40.00048256281123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           + Cp   C+k++ + + L+ H+r+ H
  Sphfalx0059s0083.1.p 256 FACPheGCTKRYIHEYKLNLHLRNaH 281
                           78*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-1099128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.679102131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-7102155No hitNo description
SMARTSM003550.0012102126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-11129151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.692131160IPR007087Zinc finger, C2H2
SMARTSM003550.0095131155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133155IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-16142194No hitNo description
Gene3DG3DSA:3.30.160.606.8E-22152183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4161185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.794161190IPR007087Zinc finger, C2H2
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-14184215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.13E-6185218No hitNo description
SMARTSM003550.0028191216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.237191221IPR007087Zinc finger, C2H2
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8250278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.11E-5251278No hitNo description
PROSITE profilePS501579.515256286IPR007087Zinc finger, C2H2
SMARTSM003550.035256281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRIPEEENSK EYGEEGDLMI MGVQKPEVFT KVDNMSVVGL VETTNPPPRK WVKHWVPQDT  60
VLNPGKLRTL KWIPGDAIPQ LNDLKVSEEE EHETEVELET LYLCSFEGCG RVFPEMPALR  120
KHLHIHGEKQ YICHHNGCGK GFMDSSKLKR HFLSHTGERQ FVCPMEGCGK AFSLDFNLRS  180
HMRTHTGEKY HACPYEDCGK RYAHEYKLRA HMRSYHDKNR PETTPPPLQV EREREVITPK  240
PVAPSRPDTS AQERPFACPH EGCTKRYIHE YKLNLHLRNA HLDEELENER LQHEKQGSDG  300
DGEEVAGGSY EEVPPVRPPV RSSGKGKLCV SSKISASKVK RKRPTGSAQR VPSTIKVPTA  360
AKPLKRPSRG DSEETEDEDG EDDADNHWQR MQRIIPVEDD EETEDDAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-341042158117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379566.11e-109zinc finger transcription factor YY1-like
TrEMBLA0A2R6WFZ91e-113A0A2R6WFZ9_MARPO; Uncharacterized protein
STRINGPP1S42_134V6.14e-99(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.12e-85C2H2 family protein