PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0059s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 409aa MW: 46608.2 Da PI: 6.3161 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 104 | 126 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg++F+ L++H+ H Sphfalx0059s0083.1.p 104 CSfeGCGRVFPEMPALRKHLHIH 126 88889**************9988 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00015 | 131 | 155 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s LkrH +H Sphfalx0059s0083.1.p 131 YICHhnGCGKGFMDSSKLKRHFLSH 155 89*******************9888 PP | |||||||
3 | zf-C2H2 | 23 | 2e-07 | 161 | 185 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H+rtH Sphfalx0059s0083.1.p 161 FVCPmeGCGKAFSLDFNLRSHMRTH 185 89**********************9 PP | |||||||
4 | zf-C2H2 | 19.1 | 3.5e-06 | 191 | 216 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp dCgk++ + + L+ H+r+ H Sphfalx0059s0083.1.p 191 HACPyeDCGKRYAHEYKLRAHMRSyH 216 679********************999 PP | |||||||
5 | zf-C2H2 | 12.4 | 0.00048 | 256 | 281 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C+k++ + + L+ H+r+ H Sphfalx0059s0083.1.p 256 FACPheGCTKRYIHEYKLNLHLRNaH 281 78*********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-10 | 99 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.679 | 102 | 131 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.48E-7 | 102 | 155 | No hit | No description |
SMART | SM00355 | 0.0012 | 102 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-11 | 129 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.692 | 131 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0095 | 131 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 133 | 155 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.26E-16 | 142 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-22 | 152 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.9E-4 | 161 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.794 | 161 | 190 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-14 | 184 | 215 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.13E-6 | 185 | 218 | No hit | No description |
SMART | SM00355 | 0.0028 | 191 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.237 | 191 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 250 | 278 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.11E-5 | 251 | 278 | No hit | No description |
PROSITE profile | PS50157 | 9.515 | 256 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.035 | 256 | 281 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 258 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MRIPEEENSK EYGEEGDLMI MGVQKPEVFT KVDNMSVVGL VETTNPPPRK WVKHWVPQDT 60 VLNPGKLRTL KWIPGDAIPQ LNDLKVSEEE EHETEVELET LYLCSFEGCG RVFPEMPALR 120 KHLHIHGEKQ YICHHNGCGK GFMDSSKLKR HFLSHTGERQ FVCPMEGCGK AFSLDFNLRS 180 HMRTHTGEKY HACPYEDCGK RYAHEYKLRA HMRSYHDKNR PETTPPPLQV EREREVITPK 240 PVAPSRPDTS AQERPFACPH EGCTKRYIHE YKLNLHLRNA HLDEELENER LQHEKQGSDG 300 DGEEVAGGSY EEVPPVRPPV RSSGKGKLCV SSKISASKVK RKRPTGSAQR VPSTIKVPTA 360 AKPLKRPSRG DSEETEDEDG EDDADNHWQR MQRIIPVEDD EETEDDAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 5e-34 | 104 | 215 | 8 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379566.1 | 1e-109 | zinc finger transcription factor YY1-like | ||||
TrEMBL | A0A2R6WFZ9 | 1e-113 | A0A2R6WFZ9_MARPO; Uncharacterized protein | ||||
STRING | PP1S42_134V6.1 | 4e-99 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 2e-85 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0059s0083.1.p |