PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0059s0078.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 525aa MW: 56720.2 Da PI: 7.1635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0059s0078.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	275	320	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h rEr+RRd++ ++f+ L +llP++ K + ++i+ +Y+k+L Sphfalx0059s0078.1.p 275 DHILRERQRRDEMSNKFAVLESLLPPS-----SKRDRSTIVSDSADYVKNL 320 6999*******************98.....699************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.678	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	275	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-11	275	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	276	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.68E-9	276	324	No hit	No description
SMART	SM00353	9.7E-7	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MLFDGVCSAS SLHNSFETTL YGSRFGLAHN VMEYSSLDLH STTGQFDKHT DFAGSYPFVD 60 SCVNNAGLEM VGGSQFRAMC QNPYRWSDSA SSCLQWAKVQ AGEPLLSHTS SSSVPGASPS 120 AAAVVPSVSV AADVDPRGQQ FEVFSPSFPD EVPAFSVQLG ASFPSPQSAC RQRMAPFPTT 180 RQLELVSVVG KSSYDNNTPA AAAFVESSSQ YRANVGVDRW GGESVPSPAV SKRVRDKFTD 240 PHKVQQRIRK AEKNLGCSLP QGAGAKPKVT LEHADHILRE RQRRDEMSNK FAVLESLLPP 300 SSKRDRSTIV SDSADYVKNL HHRIGVLQQR RIKMAAAAGA TTTEASPAPH HGSPILAPST 360 SAWNPLSPPV QTLQSSPDSA ALCLKQSNPK KLMEDQVCQD QDSKKSSSCF PTEQELREIN 420 LVLKSCVEKL EVCLDLPHKI FIHMICRPQE RFQSNVLQGI ESLNLEVLQC NISSVVASVI 480 CIISAKPWDI PAYDALCKDD IIAAVHSALG PDAMVGAITL QKGL*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MLFDGVCSAS SLHNSFETTL YGSRFGLAHN VMEYSSLDLH STTGQFDKHT DFAGSYPFVD  60
SCVNNAGLEM VGGSQFRAMC QNPYRWSDSA SSCLQWAKVQ AGEPLLSHTS SSSVPGASPS  120
AAAVVPSVSV AADVDPRGQQ FEVFSPSFPD EVPAFSVQLG ASFPSPQSAC RQRMAPFPTT  180
RQLELVSVVG KSSYDNNTPA AAAFVESSSQ YRANVGVDRW GGESVPSPAV SKRVRDKFTD  240
PHKVQQRIRK AEKNLGCSLP QGAGAKPKVT LEHADHILRE RQRRDEMSNK FAVLESLLPP  300
SSKRDRSTIV SDSADYVKNL HHRIGVLQQR RIKMAAAAGA TTTEASPAPH HGSPILAPST  360
SAWNPLSPPV QTLQSSPDSA ALCLKQSNPK KLMEDQVCQD QDSKKSSSCF PTEQELREIN  420
LVLKSCVEKL EVCLDLPHKI FIHMICRPQE RFQSNVLQGI ESLNLEVLQC NISSVVASVI  480
CIISAKPWDI PAYDALCKDD IIAAVHSALG PDAMVGAITL QKGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	5e-09	ABA-inducible BHLH-type transcription factor

Link Out ? help Back to Top
Phytozome	Sphfalx0059s0078.1.p