PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0059s0077.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 518aa    MW: 56981.6 Da    PI: 5.4653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0059s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11287329754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           + Er+RR+++N+++  Lr l+Pk +      K++Ka+i+  A++Y+++L
  Sphfalx0059s0077.1.p 287 ASERKRRKKLNDGLYSLRGLVPKiS------KMDKASIVGDAIDYLREL 329
                           67*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.396280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.40E-12282332No hitNo description
SuperFamilySSF474592.09E-15282347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15287349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9287329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MYQKQLHFLA GYPGGLVEPF IAEDHHHQSS DMYPTAAYDI LPQLLGLANS TALGTIQTDH  60
QRQDMRGVRY AQREQELRPW ETDQMGSKLY DTSSILCEDP FWKLEGLHST PTIAHENLGI  120
GDGSVPSFPT KICKADNDQA NGWHWYELLD EVQTVSPAEH RAETHFGYTP NSSPMIETRD  180
LKISVMHEVA RNEEEHVAVS NASGELLCGF NPRSSEDGQG ENLFQQDNFV LPSPPEETET  240
TRPTSGVRTS RPRVNMPENV SEEEVVHEKK GTRLSPGGTT TVSKNLASER KRRKKLNDGL  300
YSLRGLVPKI SKMDKASIVG DAIDYLRELK KEMKDIETEI AELEQKCSKS MGIEDASAAA  360
SAAGSTHTRG LINHVDLGST VNNSSHTIIN GGSSEATDAG APTTSDPKNG TRVTRKKLTS  420
LSTIQAPSAA KLAETLLDVE LERLDDHTYH LRATCQRSPG VLLRLVQALE LLDLDVLNAN  480
HVSAQNIIVN NIVIEVKDRK METGDFRNAF LNVAAGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288295ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-19bHLH family protein