PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0059s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 675aa    MW: 72559 Da    PI: 4.5342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0059s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-116076471055
                           HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           r RR++iN+++ +L+ l+P+ a      K++ +++Le+A++Y+k+Lq
  Sphfalx0059s0005.1.p 607 RHRRNKINERLKTLQHLVPNgA------KVDIVTMLEEAIDYVKYLQ 647
                           89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-15596659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.142597646IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-15602657IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13603652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-11606651No hitNo description
PfamPF000101.8E-8607647IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MAGYNSSIDS GSASAEETSS SEIHLVTCNI ADVSMWDSWS TRAASDSGHH DELATANSSS  60
STAEEQLGDC SNPRGLSLQC QPDNNMLSGW LSSFNSMSQT TGLDSLQLCE QADHLSVPDP  120
PTAAAGPLIR SEYYGQLQQP GSAALMCCNS SLIDYDDPAV DQSSDDAVQT LELADLYIRT  180
AAGGLKNVLH ADQSPPYYSY VSTPNCVVSC DDQELSSESY STSFCREETF AFGTAQTALQ  240
LLQSLDSDQS PSSPDRPIYN NTPTQLPFVG SWDGSNYVVP VSTWVSNCPQ ASSQVLAGGG  300
TNLRQLMHAD HYSCVNQFSA AELLQAAERD QLFPASFTAS GDPGYYATYN HPSKAMIRSS  360
EHPKAASGTI DRQNFDTLMN RSSVVTWPNY CTNAEIFTEM LGNNFSAPIA AGGTWAPACS  420
AAQAGSSNNS SRSMKLLPAP ALNNEVAEPA AETAADGDDL HSTREDRVSS VSTNPVSGTI  480
PTSCSTVGVV ELAELQHLNK DRPGGKHRLE LVGIDSACED ETSPPRLKRK GNEPNIPPTW  540
QRIQNLKYGV TPDPKPKTFE SHTSSSSCSS LQLEVMDMIA VGPALNTNGK PRARRGSATD  600
PQSIYARHRR NKINERLKTL QHLVPNGAKV DIVTMLEEAI DYVKYLQNQV KLLKMEQWMS  660
GTPTIYNGVD ISAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-33bHLH family protein