PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0058s0104.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | DBB | ||||||||
Protein Properties | Length: 248aa MW: 27277.8 Da PI: 5.8571 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 8.9e-07 | 4 | 34 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ +e ++lfC ++ lC C ++ H g Sphfalx0058s0104.1.p 4 LCDVCEGAAARLFCAADEAALCLRCDEKVH-G 34 7******99*******************99.5 PP | |||||||
2 | zf-B_box | 23 | 1.6e-07 | 53 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 ++C+ +e+ + +fC +++ lC dC + H g H+ Sphfalx0058s0104.1.p 53 VPRCDICENAAAFFFCGIDGTSLCLDCDMDVHIGgkktHE 92 589*******9******************99944555675 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.48 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-5 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-6 | 3 | 45 | No hit | No description |
SMART | SM00336 | 2.0E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.631 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.3E-6 | 53 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.40E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKILCDVCEG AAARLFCAAD EAALCLRCDE KVHGCNKLAS RHVRLELAES RAVPRCDICE 60 NAAAFFFCGI DGTSLCLDCD MDVHIGGKKT HERYLLTGQR VELPTRKLTP EETIDVDQEA 120 GDFNKDGTQQ QQQQQIIHHH HHHHHHHHHD EVLQAERIII PNSSCEHKSS NMLAVEIVMG 180 DKEPLLLESN QPVSHMIDLN AQPKHLLTQA SLPDKRDGPE EPLSTTGVNG AGVVPNLPPT 240 ALEETGS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387802.1 | 2e-81 | B-box zinc finger protein 18-like | ||||
Refseq | XP_024387803.1 | 2e-81 | B-box zinc finger protein 18-like | ||||
TrEMBL | A9RVR6 | 6e-80 | A9RVR6_PHYPA; Predicted protein | ||||
STRING | PP1S31_376V6.1 | 9e-81 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 3e-51 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0058s0104.1.p |