PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0057s0068.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 583aa MW: 63242.3 Da PI: 9.1827

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0057s0068.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.9	4.8e-12	463	554	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklk..kplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfd 83 Wt ev aLi +r +m+e++ r+k+k + W++ ++m gf ++ + C++k l ++y++ +++ k++t +++ ++++ f+ Sphfalx0057s0068.1.p 463 WTTAEVEALISLRGQMDEEFDRNKQKqgVNTWSKLHQRMtsVVPGFCKTVNACRKKYALLYNDYRRYRKSIKNGTtdtATKNKKVAIFE 551 *******************976553389*****55557***********************99999523366778899999 PP trihelix 84 qle 86 q++ Sphfalx0057s0068.1.p 552 QMD 554 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54695	5.76E-15	114	215	IPR011333	SKP1/BTB/POZ domain
Gene3D	G3DSA:3.30.710.10	3.0E-16	114	214	No hit	No description
Pfam	PF00651	9.2E-14	115	214	IPR000210	BTB/POZ domain
SMART	SM00225	6.6E-10	118	215	IPR000210	BTB/POZ domain
PROSITE profile	PS50097	14.377	118	183	IPR000210	BTB/POZ domain
Pfam	PF13837	5.2E-10	461	555	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MASSSPVPVG STHKQHKQEL VAAEGGAAAV ASVAVASPAP APAPPAPPPP PHGSKLAVNK 60 KRAVHHAKGN SSSNSKAAAD ATIKSLRAQV QRLEKQRQFL TSWRPEALLG VDAEAAFVDV 120 ELKAGDGLSV YAHKSVLVVR SKDFETLLLM DPSTKVIEVP EMTGDQLRVF VSFFYTGEIS 180 ANDLLHHTTA FLLAADKYKV PYLGAVCEDA LISNLSRQNA ITTFDIVKNH CSDATKEAVL 240 KKAMKMGELS QYEEYKLYTT KNPALLLELY EQLSEPIEST PTKKHRVAPE NGTVENDTNN 300 SDGAENESGS NEGVEEDHKV DMKEMKQEGE NEVTLGGTAP MNGSSPFGGS GGGVVYWHSG 360 PPRPPQHGQT FPLGYNKGVY NQGHRPPFYG QLVPGPPFAV PPFMPAMYPS GSLPRDLAGA 420 ALPGSPGQAE RPPSTTEEHI VQGKPKRKKL SKHQAKVEGR RGWTTAEVEA LISLRGQMDE 480 EFDRNKQKQG VNTWSKLHQR MTSVVPGFCK TVNACRKKYA LLYNDYRRYR KSIKNGTTDT 540 ATKNKKVAIF EQMDRWRLRH RVKADASAGD TTDSPGSSGD EG*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MASSSPVPVG STHKQHKQEL VAAEGGAAAV ASVAVASPAP APAPPAPPPP PHGSKLAVNK  60
KRAVHHAKGN SSSNSKAAAD ATIKSLRAQV QRLEKQRQFL TSWRPEALLG VDAEAAFVDV  120
ELKAGDGLSV YAHKSVLVVR SKDFETLLLM DPSTKVIEVP EMTGDQLRVF VSFFYTGEIS  180
ANDLLHHTTA FLLAADKYKV PYLGAVCEDA LISNLSRQNA ITTFDIVKNH CSDATKEAVL  240
KKAMKMGELS QYEEYKLYTT KNPALLLELY EQLSEPIEST PTKKHRVAPE NGTVENDTNN  300
SDGAENESGS NEGVEEDHKV DMKEMKQEGE NEVTLGGTAP MNGSSPFGGS GGGVVYWHSG  360
PPRPPQHGQT FPLGYNKGVY NQGHRPPFYG QLVPGPPFAV PPFMPAMYPS GSLPRDLAGA  420
ALPGSPGQAE RPPSTTEEHI VQGKPKRKKL SKHQAKVEGR RGWTTAEVEA LISLRGQMDE  480
EFDRNKQKQG VNTWSKLHQR MTSVVPGFCK TVNACRKKYA LLYNDYRRYR KSIKNGTTDT  540
ATKNKKVAIF EQMDRWRLRH RVKADASAGD TTDSPGSSGD EG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395616.1	1e-147	uncharacterized protein LOC112291890
TrEMBL	A0A2K1JIC6	1e-146	A0A2K1JIC6_PHYPA; Uncharacterized protein
STRING	PP1S48_17V6.1	1e-146	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0057s0068.1.p