PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0056s0091.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 25612.7 Da PI: 7.6976 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 144.6 | 2.2e-45 | 86 | 173 | 14 | 101 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +fkn +lPlarikki+k+dedvkmi+a+aPvl++kace+fileltl sw+h+eenk rtl+++dia a+t+ difdflvdivprd+l Sphfalx0056s0091.1.p 86 REFKNYQLPLARIKKIMKSDEDVKMIAADAPVLFAKACEMFILELTLCSWIHTEENKWRTLQRNDIAGAITKGDIFDFLVDIVPRDKL 173 58***********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.87E-27 | 87 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-19 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-34 | 93 | 170 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPTTASGMLH PRAVMASQYA HSQPQLHCQH VQKQQLQAFW QQQMQEIEQV NGANCCGIVS 60 IICCFWFCIS LASLVSDGLF FRFRGREFKN YQLPLARIKK IMKSDEDVKM IAADAPVLFA 120 KACEMFILEL TLCSWIHTEE NKWRTLQRND IAGAITKGDI FDFLVDIVPR DKLKVRVYTA 180 FGIFSSTISM SDFPCRYSSM GQTKDEDLAI PWSGVSGTIQ WWHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-45 | 87 | 170 | 12 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 1e-55 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 4e-49 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A388LK17 | 1e-52 | A0A388LK17_CHABU; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 4e-55 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-50 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0056s0091.1.p |
Publications ? help Back to Top | |||
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