PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0056s0026.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 331aa    MW: 35627.2 Da    PI: 9.3615
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0056s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-083983244
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          g+WT +Ed+ + +a + +  +   +W+ +a+ ++ g+    +k ++
  Sphfalx0056s0026.1.p 39 GAWTRQEDLVFENALAIHEEEapnRWENVAALIP-GKDVAAVKRHY 83
                          89*****************99*************.**********9 PP
2Myb_DNA-binding39.81e-12166210347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Sphfalx0056s0026.1.p 166 PWTEEEHRLFLIGLTKFGKGDWRSISRNFVISRTPTQVASHAQKY 210
                           7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.2573691IPR017884SANT domain
SMARTSM007172.5E-63789IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-43889IPR009057Homeodomain-like
PfamPF002498.0E-63983IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-93991IPR009057Homeodomain-like
CDDcd001674.01E-64083No hitNo description
PROSITE profilePS5129417.951158215IPR017930Myb domain
SuperFamilySSF466891.27E-16161216IPR009057Homeodomain-like
SMARTSM007174.2E-9163213IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-16163213IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.2E-11164209IPR009057Homeodomain-like
PfamPF002493.7E-10166210IPR001005SANT/Myb domain
CDDcd001677.50E-9166211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSSSGQPLR PAVMVVSSPS SFPSSTPASS SSPSWNHSGA WTRQEDLVFE NALAIHEEEA  60
PNRWENVAAL IPGKDVAAVK RHYEILREDI GSIDAGRIPI PSYCTLSSSS PSVSDDLGTK  120
LGHSAGFHEG PPHSMQASPG MLGSPSGVRS VTTSKSADQE RRKGIPWTEE EHRLFLIGLT  180
KFGKGDWRSI SRNFVISRTP TQVASHAQKY FIRLNSINKD KRRSSIHDIT SINNNHPGEQ  240
MQPGHGPITG QGLTPGPGQF LLHPVQQGLQ PGMYGPPQMG QPALGTAVML PPSGSVPYGP  300
RGHMQPSVMP GTLMTMQHMA YPMQQTAMHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-15411051175RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.11e-110transcription factor SRM1-like
RefseqXP_024366443.11e-110transcription factor SRM1-like
TrEMBLA0A2K1IC531e-108A0A2K1IC53_PHYPA; Uncharacterized protein
STRINGPP1S256_11V6.11e-109(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-65MYB family protein