PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0055s0091.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 935aa    MW: 100075 Da    PI: 6.5499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0055s0091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.7e-27440499159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK+ kg+ +pr+YY+C+ + +C v+k+v+r+a+d +v++ tY+g+Hnh+
  Sphfalx0055s0091.1.p 440 VNDGCHWRKYGQKMSKGNSCPRAYYKCSITsSCAVRKQVQRCADDASVLISTYQGKHNHP 499
                           58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280151173IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.20.25.802.9E-29425499IPR003657WRKY domain
SuperFamilySSF1182904.71E-24433500IPR003657WRKY domain
PROSITE profilePS5081126.463435501IPR003657WRKY domain
SMARTSM007746.7E-31440500IPR003657WRKY domain
PfamPF031061.0E-22441499IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MNCMENLVQR PDVRRSSCSN TANGRTDRVA DIDLSLRLTD HEEGQYLSEK DAELDRVPDQ  60
RLVDEKKMEK AISSQHYHIS KTGPAIAAAG SGKSWLLHKN DAVLEAATTT STLHRNSPGN  120
WLPVCLVGKE EPHDDAEVDA VAWSCDAVHR CVVVGCQCSF ANKWELTTHA KDHLNNTVRE  180
QSSIVEDATS PNTSTRTSIS HQELRNQLFA ARKEMARLSE ENAILRRNWL AQDTIKSSRN  240
MRLQFIAENS QSDEPTQMAD EDLHEEEEDH EAFIVSLSTQ KRQHDHGPAI SSGSPQISSP  300
RGHSEPSSSP PVPDATCDLL PARTSTTAAA DASLVWRYKK VRKLVSSSTN SMTPSPDLQE  360
AASGTLDSQM VENSDPALVE FHVATESLQS RSSDHVIVQC ENTNHQLLDN TNLFIGVSNA  420
APLVRKARVS VRARSESSMV NDGCHWRKYG QKMSKGNSCP RAYYKCSITS SCAVRKQVQR  480
CADDASVLIS TYQGKHNHPL APAAAAMAST TAAAASMLLS GSTAGSDIAQ YMPGCSLMPS  540
TSLAGLHGLP ATCFAISSST SSYPSITLDF TKEPPTRLSL RSGAANSAGV VGHSSAAAPN  600
MISTQYYSNP LSGPFSAGHH RVVERLSSVQ QAAHDRLQPN SFVISDLDQL AGRTRTVAPR  660
PNYMNPISHP IDFSQSAAGT AFSNITPGIY PSSFCETSGS ACHASTATVF EQSMQEQQKQ  720
LEDNIARRIR SSLSYMQNPS DPSRQTCTAP AATSGAAAGS IQSNSMTTAI TSDQKFAATL  780
ASALVSLLSN TSAHENSPQN SAAAANDHGM IKNAAQGSIM QQIRVETENP VSHGTHAAVT  840
HGDEDQTVDT GLELALSTSA RNSTTLSSSA PHPRLLVNSN QLQPLQSSAL THETSSLALE  900
SSSTLLTHEQ LQIVATASAT RAATATSSSS FCTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18431500876Probable WRKY transcription factor 4
2lex_A2e-18431500876Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-27WRKY DNA-binding protein 61