PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0055s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17592.1 Da PI: 10.2839 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.7e-13 | 79 | 120 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE +++++a k +G++ +++Ia+ +g +R+ q++ + qky Sphfalx0055s0083.1.p 79 WTNEERQRFKKALKTFGTD-FSAIAKFVG-TRSSTQVRTHAQKY 120 *******************.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.18 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 75 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-11 | 75 | 123 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.07E-12 | 76 | 124 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-9 | 77 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-12 | 78 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-9 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEKCGMILTP ITSAAARSAA TKSVMPEHYL QNMDTLGLQQ LEHLEKELEQ AKQKILVLKA 60 QEHCETTSPD SKVSESRYWT NEERQRFKKA LKTFGTDFSA IAKFVGTRSS TQVRTHAQKY 120 YAKLIRDYKR SGKSGSATIK AGREEMKGAT NRLTAM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380186.1 | 5e-78 | myb-like protein I | ||||
TrEMBL | A0A2K1KBB1 | 1e-76 | A0A2K1KBB1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S87_134V6.1 | 2e-77 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 2e-11 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0055s0083.1.p |