PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0055s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 696aa MW: 77999.1 Da PI: 6.3213 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 331.8 | 1.3e-101 | 317 | 685 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +Ll+cA+av+++d++l +l+ +l+++ +p+g+ qR+a yf+e L a++++++ ely a++ ++ s +e l+a++ + + P++ Sphfalx0055s0043.1.p 317 ATLLRCAKAVEQKDFKLGAELIGELRKHTTPYGNGPQRVAYYFMESLVAKMSSTGRELYMAITNNRPS---AAEMLNAMRSYIDNAPFM 402 68*********************************************************999888887...89**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++ h aN+++lea++g++rvH++D++i++G+QWp++++ La+Rp+gpp+lRiTg+++p++g e+++etg+rLa++A+e+gvpfef Sphfalx0055s0043.1.p 403 QVVHCFANNTLLEAFKGASRVHVVDYGIMYGIQWPSFMHMLAQRPGGPPQLRITGIDRPQPGfkPLERIQETGHRLARLAKEVGVPFEF 491 *************************************************************99999*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ +a+++e++++ +L ++++E l Vn++l+ +++des +s+r+ +L+ ++s++Pkv+v v a +n + F rf eal++ s+ Sphfalx0055s0043.1.p 492 HA-IADKWETITPAHLFLRKDEILGVNCALRFRHMMDESIIATSPRTMLLNKIRSMNPKVFVQVVISAGYNLPLFIPRFQEALHHNSVS 579 **.7************************************************************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 fd le+ + +e eri E+e+lgr i nvvac g er+er t+++W r ++aGF+ +p + ++ ++ +++ +++++d + + e++g Sphfalx0055s0043.1.p 580 FDVLEKAMYAEPTERIIFEKEILGRIIFNVVACDGLERVERPGTYREWDTRARQAGFTHLPRNPTIIAKLRAIFNTFQED-FGIGEDDG 667 ******************************************************************************66.******** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 + + gWk++ L+ ++aW+ Sphfalx0055s0043.1.p 668 WCLAGWKGHILYGFTAWE 685 *****************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.362 | 289 | 666 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-99 | 317 | 685 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MEKTNEKSLV EVSGVVSPLA LQLQEAWLQT QMPKAQKQSL IPLTTTITNT PEEISVRDSI 60 SPLPKDSMLK SLATIFPEVD ATTKQDQPTT PFTQKDGDVS TQPKAIANRN RVHPMNSLIN 120 GVNHVQSIKP SSIMQGSKLP LVKVPPSLTS QPPPHVQSSN VSTLPTSLQK LEPIGVSNVD 180 SFNVVEIVEE NQPLFSYLNG LMDENLEEVI DNDPQMMARE LGVLTDVTTV THEEIGSFPK 240 WTNAWANDRQ NPLQEDDIST SNHFIHGDDP EVGGIMTTND NIEFHDMPKL KYANIPNSHR 300 IEQISNEAHM SANELNATLL RCAKAVEQKD FKLGAELIGE LRKHTTPYGN GPQRVAYYFM 360 ESLVAKMSST GRELYMAITN NRPSAAEMLN AMRSYIDNAP FMQVVHCFAN NTLLEAFKGA 420 SRVHVVDYGI MYGIQWPSFM HMLAQRPGGP PQLRITGIDR PQPGFKPLER IQETGHRLAR 480 LAKEVGVPFE FHAIADKWET ITPAHLFLRK DEILGVNCAL RFRHMMDESI IATSPRTMLL 540 NKIRSMNPKV FVQVVISAGY NLPLFIPRFQ EALHHNSVSF DVLEKAMYAE PTERIIFEKE 600 ILGRIIFNVV ACDGLERVER PGTYREWDTR ARQAGFTHLP RNPTIIAKLR AIFNTFQEDF 660 GIGEDDGWCL AGWKGHILYG FTAWEPAIVN PPSLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-51 | 321 | 686 | 24 | 379 | Protein SCARECROW |
5b3h_D | 7e-51 | 321 | 686 | 24 | 379 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-119 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0055s0043.1.p |