PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0055s0023.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 649aa MW: 69324.7 Da PI: 6.7349

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0055s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	2e-32	344	402	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+versaed+ +v++tYeg+H+h Sphfalx0055s0023.1.p 344 MEDGYKWRKYGQKAVKNSPHPRSYYRCTIPKCPVRKRVERSAEDTGLVITTYEGTHTHV 402 58********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-34	329	404	IPR003657	WRKY domain
SuperFamily	SSF118290	1.24E-28	336	403	IPR003657	WRKY domain
PROSITE profile	PS50811	30.331	339	404	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	344	403	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	345	401	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MMGGLENDLD RLIRSSAGGK DHVPGVSQHH HQVAQLSACE DVGAASFMML QQQQQQQQGL 60 ASFTDEFLLN PLLAVPSSPT TTPWHNLLIS MNNDPFSGSA PFATSSNGSL FLQQLPKDLL 120 YSDHPIADFQ TSSSCVWGGF QAGENHNSIP KIGNFDAAAP IHEQLLNTTT PKMISSSVVA 180 SSARRNHQLP GHHQALGGDK QQLADDHDFC KRRACSFSQL ISQISQFPSS SSSPSPSAPL 240 PAPSGAGGAS TRPSTPNSSI SSGSFSDGPE DDASKQIPAG LLVGPAASSS SSKRKTPDRA 300 MNENEDIQSP ELKRPQSNKP RKKGPKRVRE PRYAIQTRSD VEIMEDGYKW RKYGQKAVKN 360 SPHPRSYYRC TIPKCPVRKR VERSAEDTGL VITTYEGTHT HVSPATNSRT STSDAPSLPA 420 SGEHRPGGAA YQPPTSSFGP FTSANSAPPP TSHSNYDLTV QIQLGAQRDQ LHASSAGHAT 480 SSLGSQLAQD IQMHGGGGGG GGSGCNGVLQ TLNNVLQEPA SLPRGGHGSL QDLFTPCIQD 540 LSFLRAQQLL LGAQSSDCQT LIRAENLRDE NFGAHCIQGE DDDDNILRAL QIPFWTQTSS 600 INNSEPLSTT ITTTRGMVLA GTDDECFRDQ SPINEGLLGD VVRLGVRW*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MMGGLENDLD RLIRSSAGGK DHVPGVSQHH HQVAQLSACE DVGAASFMML QQQQQQQQGL  60
ASFTDEFLLN PLLAVPSSPT TTPWHNLLIS MNNDPFSGSA PFATSSNGSL FLQQLPKDLL  120
YSDHPIADFQ TSSSCVWGGF QAGENHNSIP KIGNFDAAAP IHEQLLNTTT PKMISSSVVA  180
SSARRNHQLP GHHQALGGDK QQLADDHDFC KRRACSFSQL ISQISQFPSS SSSPSPSAPL  240
PAPSGAGGAS TRPSTPNSSI SSGSFSDGPE DDASKQIPAG LLVGPAASSS SSKRKTPDRA  300
MNENEDIQSP ELKRPQSNKP RKKGPKRVRE PRYAIQTRSD VEIMEDGYKW RKYGQKAVKN  360
SPHPRSYYRC TIPKCPVRKR VERSAEDTGL VITTYEGTHT HVSPATNSRT STSDAPSLPA  420
SGEHRPGGAA YQPPTSSFGP FTSANSAPPP TSHSNYDLTV QIQLGAQRDQ LHASSAGHAT  480
SSLGSQLAQD IQMHGGGGGG GGSGCNGVLQ TLNNVLQEPA SLPRGGHGSL QDLFTPCIQD  540
LSFLRAQQLL LGAQSSDCQT LIRAENLRDE NFGAHCIQGE DDDDNILRAL QIPFWTQTSS  600
INNSEPLSTT ITTTRGMVLA GTDDECFRDQ SPINEGLLGD VVRLGVRW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-25	332	404	2	74	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	3e-35	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Sphfalx0055s0023.1.p