PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0055s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 546aa    MW: 58863.5 Da    PI: 6.3298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0055s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11469514655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L++l+P+     +k  + +++L +AveY+k+L+
  Sphfalx0055s0010.1.p 469 SIAERLRRTKISERMKRLQDLVPNM----DKQTNTSDMLDEAVEYVKQLK 514
                           689*********************7....688****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716463513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16466533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-12467518No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16468535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8469513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13469519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSTIDEELNA MLQTDHHSMG LGSEHMMDIY DFSSQYSSLH AGAGTPRQLI SSPTEGGGRG  60
NSLSCVETST TSGVLISQTA GGVPASRSMA ALQQQPLWSF GDTDQKFELD KKNRVMKIAA  120
HMIRANKYPM FQPTPDAPSS QGFGGGGSLQ RYHSAPSSLL QSLVDEDAAF QDAFSQVSSS  180
PLVGNPAAGH NNNRDHGLMM RDNVIPASFF SGNNNNNLTP ITEGVPQPME TYKLLNAASS  240
TLHSYNQFLS PPTEPDQKQP SQPVASMMFG VKQESKLPAP NRTLLAKNPH RLASKDNQLV  300
RQSSLPADWF ATFNDPIDDL NSQIPFMTSS PDQESLSGGI SEETGGAAGV SGKSSMYSSQ  360
DDSFLFSDMT TTSGADGGLW NSPKSPVGLG GKRLRGVLGD TTVDRGVSGE EGAFRGRLGE  420
PAGTLIRHSS LPATINRSSY SPTFDDDLAD ISVPCQTRAK RGCATHPRSI AERLRRTKIS  480
ERMKRLQDLV PNMDKQTNTS DMLDEAVEYV KQLKQQVQDL SHTVVQLREM QQQVKGGGMK  540
GKEDK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-34bHLH family protein