PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0054s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 446aa MW: 47778.9 Da PI: 6.6014 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.8 | 3.3e-30 | 256 | 309 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Sphfalx0054s0033.1.p 256 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 309 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-19 | 253 | 313 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.927 | 253 | 312 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 255 | 314 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-24 | 257 | 309 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-7 | 259 | 308 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MCARGGGDSR GGEMKATEDD ADDDHVSEWE KGLPTNEELM PLSQSLISPA LASAFSIRHE 60 PAKTPLDVQR GARATRQNLR NQKASIPSFG SYPSFQAPDK LRGEGWVGVG DVPPVSGNGV 120 VGSGDEAARV IAGGVNQRGP LVCHPSGPYP PPGTVLVAPE IYGGGIDETS FNLVDGRSDQ 180 GSLPYMMPCA VAGGTSYERR PENSYGATRG DDSSKGGVGM LSKNVFKRAD SEPEDGDSAG 240 CPENSSEEPN ARTLKRPRLV WTPQLHKRFV DAVGHLGIKN AVPKTIMQLM NVEGLTRENV 300 ASHLQKYRLY LKRVQGLSSE GPSASDQLFA STPLPPNLGG LHYVHNHRDD VGAPPFASPN 360 VPMPYTAVAP CPMGPGHYSG YEHHPYSGVG RGMPQQSPQS DDQREQQITA NENHHNHSHN 420 YNNQTHNQPS SPPQHILTLF PTSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-33 | 256 | 312 | 1 | 57 | Transcription factor LUX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385661.1 | 6e-95 | uncharacterized protein LOC112287146 isoform X1 | ||||
Refseq | XP_024385663.1 | 3e-96 | two-component response regulator ARR12-like isoform X2 | ||||
Refseq | XP_024385664.1 | 6e-95 | uncharacterized protein LOC112287147 isoform X1 | ||||
Refseq | XP_024385665.1 | 4e-95 | uncharacterized protein LOC112287147 isoform X2 | ||||
TrEMBL | A0A2K1K355 | 9e-94 | A0A2K1K355_PHYPA; Uncharacterized protein | ||||
TrEMBL | A0A2K1K362 | 3e-94 | A0A2K1K362_PHYPA; Uncharacterized protein | ||||
STRING | PP1S104_175V6.1 | 1e-99 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 5e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0054s0033.1.p |