PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0054s0025.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 309aa MW: 33440.5 Da PI: 8.1271

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0054s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.7	9.5e-37	60	115	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ + Sphfalx0054s0025.1.p 60 TLPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGCRKRVR 115 579*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.761	61	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-31	61	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	61	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGIMHLMMSH CEEEVLDHDH LTHQGSGDSA SAGELQSPAG PATGGSGVCS VRDRSVTRVT 60 LPCPRCQSMN TKFCYYNNYS VNQPRHFCRN CQRYWTVGGT LRNVPVGGGC RKRVRTRLQR 120 SSCDDPRAGL LGAGGLVNMT LQTNILLPNA IQMQQTTQQQ LSLLSQVTGG CKLGSYSSQA 180 LLQSGLIERL PPNTNLPTFL QFSNLEHGGQ NHGFNAGTGD LNKFPTSAGL IGFQDHHQLH 240 STLHSAIYEL PSSTLQPSAN IQLLAGGDNN YAGFSNLQGG YYHTPQKLEG NHIEFLSSMV 300 HKPGYWGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-30	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Sphfalx0054s0025.1.p