PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0054s0024.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 336aa MW: 35937.1 Da PI: 8.241

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0054s0024.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.2e-37	61	117	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ + Sphfalx0054s0024.2.p 61 KVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKVR 117 6789**************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	57	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	62	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MVINMHLTMN HCQEELEAAD LMHQAVGSVD SAISAGDQQS PGSAIGGAGS AGGCLRERPV 60 KVIPCPRCQS MNTKFCYYNN YSVNQPRHFC RNCQRYWTVG GTLRNVPVGG GSRKKVRTRG 120 GQRNDIGSDQ ATHDRDPRAA GLLQGGSHGL LNMTLQPNVL LPSTIEMAAT QQQLSILSQV 180 TGGRLGSCYQ LLQPAAGLME PPTSTTTATA TSQLSTFLQF PNMDQRSGQN GSYNAAIAAA 240 FSKSAPASAA TGGLQMNQQQ QQQQDHHHLS TTLHSAMYDL QTSAMPNSTL QMGSGMHHAG 300 PFSNHGGLNN HPQNYEGNHI EFFSSLMHKP GYWGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377387.1	2e-44	dof zinc finger protein DOF2.5-like
TrEMBL	A0A2K1KFI3	4e-43	A0A2K1KFI3_PHYPA; Uncharacterized protein
STRING	PP1S177_76V6.1	7e-44	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	6e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0054s0024.2.p