PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0054s0018.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 229aa    MW: 25866.8 Da    PI: 7.2049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0054s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17653253
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                          +y+GVr+++ +g+Wv+eIr+p        +r +lg+f tae+Aa a+++a++ +
  Sphfalx0054s0018.1.p  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRLWLGTFETAEDAAHAYDEAARLM 53
                          69******9.**********8.....334*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.45E-31563No hitNo description
SMARTSM003807.4E-38669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-33663IPR001471AP2/ERF domain
PROSITE profilePS5103220.771663IPR001471AP2/ERF domain
PfamPF008472.3E-10654IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-20664IPR016177DNA-binding domain
PRINTSPR003672.2E-10718IPR001471AP2/ERF domain
PRINTSPR003672.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRTQRYRGV RQRHWGSWVS EIRHPLLKTR LWLGTFETAE DAAHAYDEAA RLMCGIRART  60
NFPLDPNAPH HPKIQMLSAN LCAKIHRWYL AAQNQQNEMQ HEIKQQLNND TSTRTEQSLT  120
CLCLDAEQSN LGIWQKKTGG KLGDEQSNWL RKVEFGISNN FPLKSSERPA TEKSDTSHDE  180
DKFASEMIEE LLGYNNSAQF ELSWSTAPSV SADSSCSSST SCLTSKFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17268168ATERF1
3gcc_A2e-17268168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386105.12e-87ethylene-responsive transcription factor ERF003-like
TrEMBLA9S9846e-86A9S984_PHYPA; Predicted protein
STRINGPP1S79_25V6.13e-79(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-36ERF family protein