PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0053s0084.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 610aa MW: 70666.6 Da PI: 6.6057

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0053s0084.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	24	43	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0053s0084.1.p 24 CSTCGPSFEDMAKYSSHLRK 43 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	3.5E-12	1	64	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	22	54	IPR007087	Zinc finger, C2H2
Pfam	PF13960	1.1E-24	250	330	IPR025452	Domain of unknown function DUF4218
Pfam	PF13952	1.8E-8	507	579	IPR025312	Domain of unknown function DUF4216

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MWTMHDYPGF GFVSGLQTQG YKACSTCGPS FEDMAKYSSH LRKIVYLGHT KFLPLGHDMR 60 SDPLLFSSFD MPYATTFAYW RDVANRVIDL NDSMVFEGSG LTRWGILNSL PYWGELKIRH 120 LLDPMHIEGN VGKAIIKQLY GKKDSNFREA CEDFERHPDV WITVDPNTGI EERPSAPWTL 180 TTQERKDFRN RIGEMRFPTG YGANLQKVFG RDDDHKWPRY LKTHDYHRLL QHILLVAIIG 240 LASAEVQDAI WSLGNLLRWV CSKELFVEEI PRMRVIAAEV VCKLEKAFPP SLFDCQVHLL 300 VHLVDEIAIA GPVHCRWMYW LERYMAVLKD PSCPHVWMEE REEEEDRLTG AIKTQLIQLT 360 TFMLNNSNVM EEWRNFYENA KSMSGRSRIF LTFHKYMKEK LVEVDQLLAQ GESITCFPEI 420 TDDVRTMVHG PLRVVTTRSA MWTQGRHFRI SSLDEKRGRT FECGVQGQFI QDSRSSGHDR 480 NIVRDIVPHY GKLEEILVVS YDGHSKFEEY VFKCKWFKVN LAGANCTVVQ DECGHTWLKT 540 SATSYQPSHW QTSEPFTFPS HVEQCFYLPY PPNPKEWSLV VTYVPRSRSI LGEKPEVVFT 600 TSEVDDDHV*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MWTMHDYPGF GFVSGLQTQG YKACSTCGPS FEDMAKYSSH LRKIVYLGHT KFLPLGHDMR  60
SDPLLFSSFD MPYATTFAYW RDVANRVIDL NDSMVFEGSG LTRWGILNSL PYWGELKIRH  120
LLDPMHIEGN VGKAIIKQLY GKKDSNFREA CEDFERHPDV WITVDPNTGI EERPSAPWTL  180
TTQERKDFRN RIGEMRFPTG YGANLQKVFG RDDDHKWPRY LKTHDYHRLL QHILLVAIIG  240
LASAEVQDAI WSLGNLLRWV CSKELFVEEI PRMRVIAAEV VCKLEKAFPP SLFDCQVHLL  300
VHLVDEIAIA GPVHCRWMYW LERYMAVLKD PSCPHVWMEE REEEEDRLTG AIKTQLIQLT  360
TFMLNNSNVM EEWRNFYENA KSMSGRSRIF LTFHKYMKEK LVEVDQLLAQ GESITCFPEI  420
TDDVRTMVHG PLRVVTTRSA MWTQGRHFRI SSLDEKRGRT FECGVQGQFI QDSRSSGHDR  480
NIVRDIVPHY GKLEEILVVS YDGHSKFEEY VFKCKWFKVN LAGANCTVVQ DECGHTWLKT  540
SATSYQPSHW QTSEPFTFPS HVEQCFYLPY PPNPKEWSLV VTYVPRSRSI LGEKPEVVFT  600
TSEVDDDHV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0053s0084.1.p