PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0053s0053.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 654aa MW: 70290.7 Da PI: 7.1326

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0053s0053.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	608	631	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C +f C+ G++C F+H+ Sphfalx0053s0053.1.p 608 RKACIYFNTAKGCRNGSSCVFIHD 631 678********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.08	605	633	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	608	631	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	609	632	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MATASLPPGF GGALMGLPAD HMGHSKPPHL HHHHHHHHLL QARVSKKVSW AAGDRLCQVR 60 LFAAEDAPDS SGTARQDLLQ AKQTKFMHAT VPISSNALPP GFTPTATMGT KPAVGAVLPQ 120 VPWRVPTLFN LHPSWRVVAG GESKEVALQR QREVRVLEAV YPRTSSIPES PAEPLEPQLP 180 CNDEMTVVIP VVPVDDDTLD QDDGLTSTVD KLHFPQESAA KEGALSPPPG FGFVAKEPNP 240 VLANWLAGAY QDNDRARGHA DSKGSHLGIT APAGSIMSGI GNISSFNPDQ SRSDPSSKPS 300 LPAVPPSCQT ETEPDVIAAA AAAYAALSQS NDHTKIDCGL LLKFLRNPSM MKNVSSQLSS 360 KDSVENRVYE VSNLGTEGTR IGNGNQQDPA AISFPVLSIE QELLHGGGDI GRTERKTSVE 420 AGGAPMDVVF ERSQGFGPAQ ATNGHDNFPV TFNARVYNGP MHTSQPHVAQ NGQLYIPATR 480 PTSAQLHPPL SVPPPAPQPV MPISGRPLSQ HDEQYLKDLI LQHGRNSSED DVHRGMNGRV 540 QEYNVLSTNG HYRTTSFTGQ SERLESAPMW PGKEYIDIAN LSLRLGDGHR NVESISRSGM 600 TQPRGKSRKA CIYFNTAKGC RNGSSCVFIH DSNNVERAKW QKVDGGKAES GYK*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MATASLPPGF GGALMGLPAD HMGHSKPPHL HHHHHHHHLL QARVSKKVSW AAGDRLCQVR  60
LFAAEDAPDS SGTARQDLLQ AKQTKFMHAT VPISSNALPP GFTPTATMGT KPAVGAVLPQ  120
VPWRVPTLFN LHPSWRVVAG GESKEVALQR QREVRVLEAV YPRTSSIPES PAEPLEPQLP  180
CNDEMTVVIP VVPVDDDTLD QDDGLTSTVD KLHFPQESAA KEGALSPPPG FGFVAKEPNP  240
VLANWLAGAY QDNDRARGHA DSKGSHLGIT APAGSIMSGI GNISSFNPDQ SRSDPSSKPS  300
LPAVPPSCQT ETEPDVIAAA AAAYAALSQS NDHTKIDCGL LLKFLRNPSM MKNVSSQLSS  360
KDSVENRVYE VSNLGTEGTR IGNGNQQDPA AISFPVLSIE QELLHGGGDI GRTERKTSVE  420
AGGAPMDVVF ERSQGFGPAQ ATNGHDNFPV TFNARVYNGP MHTSQPHVAQ NGQLYIPATR  480
PTSAQLHPPL SVPPPAPQPV MPISGRPLSQ HDEQYLKDLI LQHGRNSSED DVHRGMNGRV  540
QEYNVLSTNG HYRTTSFTGQ SERLESAPMW PGKEYIDIAN LSLRLGDGHR NVESISRSGM  600
TQPRGKSRKA CIYFNTAKGC RNGSSCVFIH DSNNVERAKW QKVDGGKAES GYK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0053s0053.1.p