PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0052s0097.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 463aa    MW: 51926.7 Da    PI: 7.8538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0052s0097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06302321120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C+ C+k+F+r  nL+ H+
  Sphfalx0052s0097.1.p 302 FSCHVCSKTFNRYNNLQMHM 321
                           89*****************9 PP
2zf-C2H213.70.00019386408123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++C+k+F  + + ++H +++
  Sphfalx0052s0097.1.p 386 FMCGKCSKTFAVRGDWRTHEKNC 408
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.658302329IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4302321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.23302324IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.82E-7302324No hitNo description
PROSITE patternPS000280304324IPR007087Zinc finger, C2H2
SMARTSM00355220349381IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4373406IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-7381406No hitNo description
SMARTSM0035571386406IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSRRCNHHQH EGYMSVAVPR SSLTSIPPHV HRPVQHLCHA EWSNPRHVQQ VPEISLRWPT  60
TVTTAFVDRP FTDMSLWPGR TTGTRSSPMN SHESSATDSP SNSVTTFYPL VEHPQQTRSS  120
LQRSNQDFYQ QNMYKRQRSS VTDAEEASAP QRRVLPFLSL SPPTADDDDQ GWDHGNLQPD  180
MSKSGDAGPR TSTVLDLRAP SDSNASCQEY SDDNDVTVAL HIGPPSSSHH RTACMDGARS  240
SLQADGSVLH GDYDDMGIPD HHHLQYKQSS QNITAERVGR LLLEGQYWIP TSAQILVGPT  300
QFSCHVCSKT FNRYNNLQMH MWGHGSQYRK GPQSLRGTQP TAMLRLPCYC CAQGCRNNIA  360
HPRSKPLKDF RTLQTHYKRK HGIKPFMCGK CSKTFAVRGD WRTHEKNCGK LWYCTCGSEF  420
KHKRSLKDHI RAFGNGHAAL GAGDSCEEDD EPVIISEDDI DP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385058.11e-128zinc finger protein WIP6-like
RefseqXP_024385059.11e-128zinc finger protein WIP6-like
SwissprotQ9SVY11e-107ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1K4711e-127A0A2K1K471_PHYPA; Uncharacterized protein
STRINGPP1S203_59V6.11e-127(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]