PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0052s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26401.9 Da PI: 6.148 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.6e-11 | 79 | 125 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL +l + + +K +Ka+iL Av+ + +L Sphfalx0052s0081.1.p 79 KACREKMRRDRLNDRFLELSAVLEPG---RPPKTDKATILSDAVRILGQL 125 678**********************8...89*************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.652 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.32E-8 | 78 | 130 | No hit | No description |
Pfam | PF00010 | 1.2E-8 | 79 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 80 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-9 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-12 | 81 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MSEPLIATKW MSYLAEGLLA EEEVVQPSNP FFWCNGQQPV EQVDCSAENE CSKGESDIPD 60 KSCSRKRLRE DACSGAGNKA CREKMRRDRL NDRFLELSAV LEPGRPPKTD KATILSDAVR 120 ILGQLRSEAQ QLQDSNNQLH DAIKELKTEK NELRDEKSRL KAEKERLEQQ VKAMTIPTGY 180 MPHPAAIHAA AAAFAAQSQA ASNKAAQMAA YPGMAMWQWM PPAAVDTSQD HVLRPPVA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390784.1 | 1e-134 | transcription factor ILR3-like | ||||
Refseq | XP_024390785.1 | 1e-134 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 4e-77 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A9TJS4 | 1e-133 | A9TJS4_PHYPA; Predicted protein | ||||
STRING | PP1S246_45V6.3 | 1e-134 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-71 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0052s0081.1.p |