PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0051s0034.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 547aa    MW: 58392.8 Da    PI: 6.3394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0051s0034.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10295336854
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            Er+RR+++N+a+  Lr l+Pk +      K++Ka+i+  Av+++++L
  Sphfalx0051s0034.2.p 295 SERKRRKKLNEALYSLRALVPKiS------KMDKASIVGDAVNFVQEL 336
                           6*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.104287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14288345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-14293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-13294341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-12294341No hitNo description
PfamPF000103.0E-8295336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGRTQDQCAG AAAAASQEPV LLQHSMSNPY FQVGLLQPPA MVSSAVGICE MGGAWNDMRT  60
LVSSSGHELQ SKPWVQLPAS SKLEIIDPFR DPSSFFMLPN QVSNVGMSLL QGSIGSAAPN  120
NCMSAATFNM PVVSSSTSAE SFKPHHLQLI TPHTQWNELK PSTVVVQSES PAQPISATAA  180
TEAQRQLPDH LALHVAAAPC SYSSPALAQQ QGSCTRDHDP AAAAKQQPEL LHALENVETS  240
SSGWSGVPEL SASTVADYCS DGGQQEQLKS MGKINTNRRK GGGCGNSIAS KNLVSERKRR  300
KKLNEALYSL RALVPKISKM DKASIVGDAV NFVQELRKEV EEMELAEINS SNLESSEHCC  360
GSSCCGSEDR MQLGNHEDSG SIIKDVTTTA GVEDAAVMTA AVVIELYNGG RRTNTAAAAG  420
GVHNAAAAAT APTAPDSNTN HKSSSHQLHL MSPKKKKKIL QVEVAKLEDE IYHLCIVCHN  480
GHGVLVQLMQ ALESLGIDFV NTHHISFQDY ILNTFVAQIK NWEMMETEDV KQKLLGVAAQ  540
YGLVQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277299RRKGGGCGNSIASKNLVSERKRR
2295302ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-17bHLH family protein