PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0051s0034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 590aa MW: 63382.8 Da PI: 6.9146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 295 | 336 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N+a+ Lr l+Pk + K++Ka+i+ Av+++++L Sphfalx0051s0034.1.p 295 SERKRRKKLNEALYSLRALVPKiS------KMDKASIVGDAVNFVQEL 336 6*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.104 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-14 | 288 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-14 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 294 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.30E-12 | 294 | 341 | No hit | No description |
Pfam | PF00010 | 3.3E-8 | 295 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MGRTQDQCAG AAAAASQEPV LLQHSMSNPY FQVGLLQPPA MVSSAVGICE MGGAWNDMRT 60 LVSSSGHELQ SKPWVQLPAS SKLEIIDPFR DPSSFFMLPN QVSNVGMSLL QGSIGSAAPN 120 NCMSAATFNM PVVSSSTSAE SFKPHHLQLI TPHTQWNELK PSTVVVQSES PAQPISATAA 180 TEAQRQLPDH LALHVAAAPC SYSSPALAQQ QGSCTRDHDP AAAAKQQPEL LHALENVETS 240 SSGWSGVPEL SASTVADYCS DGGQQEQLKS MGKINTNRRK GGGCGNSIAS KNLVSERKRR 300 KKLNEALYSL RALVPKISKM DKASIVGDAV NFVQELRKEV EEMELAEINS SNLESSEHCC 360 GSSCCGSEDR MQLGNHEDSG SIIKDVTTTA GVEDAAVMTA AVVIELYNGG RRTNTAAAAG 420 GVHNAAAAAT APTAPDSNTN HKSSSHQLHL MSPKKKKKIL QVEVAKLEDE IYHLCIVCHN 480 GHGVLVQLMQ ALESLGIDFV NTHHISFQDY ILNTFVAQAF KIDLKSYCIC EHGSKLHPAQ 540 STRWNIIATS CTMNFSFRQV LPILVMYPPP HPTPLFSFGK YSNFCTRFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 299 | RRKGGGCGNSIASKNLVSERKRR |
2 | 295 | 302 | ERKRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0051s0034.1.p |