PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0050s0118.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 491aa MW: 55714.7 Da PI: 6.5397

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0050s0118.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.5	4.5e-10	4	69	1	60
trihelix 1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt +e++aL+e+ ++ + ++++++ +W++v+k++++rg++rs k C+++w l+++ Sphfalx0050s0118.2.p 4 EWTLEETRALVEVHIelkqleKLTPQGSDSRAAIEHWDKVAKRLQDRGYHRSLKSCNKRWHRLEQY 69 5********9988555454555666678899**************************99886 PP
2	Myb_DNA-binding	23	1.8e-07	4	66	3	47
SS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...............tWktIartmg...kgRtlkqcksrwqky 47 WT eE lv+++ +l +W+++a++++ +R+lk+c rw+ + Sphfalx0050s0118.2.p 4 EWTLEETRALVEVHIELKQLekltpqgsdsraaieHWDKVAKRLQdrgYHRSLKSCNKRWHRL 66 6**************977**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.6E-4	1	69	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.758	1	67	IPR017877	Myb-like domain
Pfam	PF13837	2.8E-8	3	68	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-5	4	65	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MAREWTLEET RALVEVHIEL KQLEKLTPQG SDSRAAIEHW DKVAKRLQDR GYHRSLKSCN 60 KRWHRLEQYE VQIFSFNIEG AGNHPNYWDL TKAERIEHRA EKWPQLPLGE GIDKEIFDLI 120 KRFSQGSVEK KVMQAVVPNL GVSNNRHAPP ETIPEHQVLE AKEPELLERI SSWSSFMSEQ 180 TGLSQVPLDG FRLQAHDLRK QRAAELMRGN RTVPYNANHT NSVKTCQAHD MGNSLQQTQK 240 PSVPTRKFAI LDSKTKISVQ GGTYADRFHT KEAHPPFDSG SFSYKLDIDP VTQPTCSHLN 300 PQLAVLGLPQ NHVTTLLHPM EKAYQTFTLS TPYFNLLQPV NSHSLLLQPI DSNNVQQHHH 360 QPAMDASQHL MLDGDNLPSE LLCFDEQLEV ILDVDSTGPV LTHESFEVPQ QQRHCWQVPD 420 SQRWQDQYGS GHGSSHELLG VAIGNLEVQL HALVNLLQAR NTAEQDYQDK MLLSLESMAF 480 SLHTIAQGKV *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MAREWTLEET RALVEVHIEL KQLEKLTPQG SDSRAAIEHW DKVAKRLQDR GYHRSLKSCN  60
KRWHRLEQYE VQIFSFNIEG AGNHPNYWDL TKAERIEHRA EKWPQLPLGE GIDKEIFDLI  120
KRFSQGSVEK KVMQAVVPNL GVSNNRHAPP ETIPEHQVLE AKEPELLERI SSWSSFMSEQ  180
TGLSQVPLDG FRLQAHDLRK QRAAELMRGN RTVPYNANHT NSVKTCQAHD MGNSLQQTQK  240
PSVPTRKFAI LDSKTKISVQ GGTYADRFHT KEAHPPFDSG SFSYKLDIDP VTQPTCSHLN  300
PQLAVLGLPQ NHVTTLLHPM EKAYQTFTLS TPYFNLLQPV NSHSLLLQPI DSNNVQQHHH  360
QPAMDASQHL MLDGDNLPSE LLCFDEQLEV ILDVDSTGPV LTHESFEVPQ QQRHCWQVPD  420
SQRWQDQYGS GHGSSHELLG VAIGNLEVQL HALVNLLQAR NTAEQDYQDK MLLSLESMAF  480
SLHTIAQGKV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-06	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0050s0118.2.p