PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0050s0118.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 491aa MW: 55714.7 Da PI: 6.5397 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 31.5 | 4.5e-10 | 4 | 69 | 1 | 60 |
trihelix 1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt +e++aL+e+ ++ + ++++++ +W++v+k++++rg++rs k C+++w l+++ Sphfalx0050s0118.1.p 4 EWTLEETRALVEVHIelkqleKLTPQGSDSRAAIEHWDKVAKRLQDRGYHRSLKSCNKRWHRLEQY 69 5**********9988555454555666678899****************************99886 PP | |||||||
2 | Myb_DNA-binding | 23 | 1.8e-07 | 4 | 66 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...............tWktIartmg...kgRtlkqcksrwqky 47 WT eE lv+++ +l +W+++a++++ +R+lk+c rw+ + Sphfalx0050s0118.1.p 4 EWTLEETRALVEVHIELKQLekltpqgsdsraaieHWDKVAKRLQdrgYHRSLKSCNKRWHRL 66 6****************977****************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.6E-4 | 1 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.758 | 1 | 67 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.8E-8 | 3 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 4 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 491 aa Download sequence Send to blast |
MAREWTLEET RALVEVHIEL KQLEKLTPQG SDSRAAIEHW DKVAKRLQDR GYHRSLKSCN 60 KRWHRLEQYE VQIFSFNIEG AGNHPNYWDL TKAERIEHRA EKWPQLPLGE GIDKEIFDLI 120 KRFSQGSVEK KVMQAVVPNL GVSNNRHAPP ETIPEHQVLE AKEPELLERI SSWSSFMSEQ 180 TGLSQVPLDG FRLQAHDLRK QRAAELMRGN RTVPYNANHT NSVKTCQAHD MGNSLQQTQK 240 PSVPTRKFAI LDSKTKISVQ GGTYADRFHT KEAHPPFDSG SFSYKLDIDP VTQPTCSHLN 300 PQLAVLGLPQ NHVTTLLHPM EKAYQTFTLS TPYFNLLQPV NSHSLLLQPI DSNNVQQHHH 360 QPAMDASQHL MLDGDNLPSE LLCFDEQLEV ILDVDSTGPV LTHESFEVPQ QQRHCWQVPD 420 SQRWQDQYGS GHGSSHELLG VAIGNLEVQL HALVNLLQAR NTAEQDYQDK MLLSLESMAF 480 SLHTIAQGKV * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47660.1 | 2e-06 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0050s0118.1.p |