PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 775aa    MW: 85598 Da    PI: 5.6262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13565611455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++Lq
  Sphfalx0050s0032.1.p 565 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAITYINELQ 611
                           799***********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-5969246IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.136561610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-15564615No hitNo description
SuperFamilySSF474591.96E-18564629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18565628IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10565611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-17567616IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MGAVDASGLR THTQMQSLWD DAESVDHAMI EAFMGSGGLG LTNNYSHQEQ EDLGSCGGGV  60
ELSETVLLRR LHSLVEESSL NWTYGIFWQL STSATGELLL GWGDGYYKGP KETEMNERKL  120
MDDNNWEEDQ QLRRKVLREL QALVCNSEDD VSDNVTDTEW FYLVSMSYSF PRGVGIPGQA  180
LATGQHVWLV EANKAPEHIS TRGHLAKMAG IQTILCVPTR NGVVELGSTD LISENRDVVQ  240
QVTLVFDELT WGVGEAQTMS QRLLRDGETK FQQQHASGRS LTATSGPTTN FGPLNTGLGQ  300
AKEHDINYGA RLLPVDKMGS PMAYAGQKIG SPLAFTGIEG MDFLWGHSAE FPFNDALSVD  360
AVDKEGGHTA VSYPLAKFPM QEEKQSFLKL NTIDGGLTLD RKLSSLQGVV NATSFAEQRP  420
SLLPTGERRY MNLESSISPQ QNRKPDLNGV SITVGPTQSA RVMEPVQQEN GKVLHARGDF  480
AKVVGEKKPE PIFKMKNQEQ HTKTIGLPVS SNLHSSSDHR EWNNVESGGA VSFKGNGVEH  540
SLSPDPKLPR KRGRKPANNR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL  600
GDAITYINEL QSKLEEVEFQ LKELQGQANT SSERPQESVF PTGREQTGNS TKESLSSQGV  660
RSSNSTSVMG TYFSKRAPDI SVHILGDKAM IRLNCLRDTY SMANLMMSLQ ELRLEVQHAN  720
TSTVEDALLH IIIVRMEGTA TLTEEQLSAA LRKAYDSYQV HTEGYRPLDA LLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-37612473193Transcription factor MYC3
4rqw_B2e-37612473193Transcription factor MYC3
4rs9_A2e-37612473193Transcription factor MYC3
4yz6_A2e-37612473193Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00085PBMTransfer from AT5G46760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370448.10.0transcription factor MYC4-like isoform X1
TrEMBLA9SFN90.0A9SFN9_PHYPA; Predicted protein
STRINGPP1S74_41V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-49bHLH family protein