PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0049s0139.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 504aa    MW: 54971.3 Da    PI: 7.1611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0049s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11308355355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k Lq
  Sphfalx0049s0139.1.p 308 QDHIMAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYVKTLQ 355
                           5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.002305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-16309366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.24E-13310359No hitNo description
SMARTSM003532.2E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEVAYPLTTT MQWLSELGME DPALARQLDP LFHLTSEQYS SIVATQNANY DLLSSLESLK  60
QKEIQKMPAS YCIGGNSTVS NSHGAAAGFA ASSSSDHHHG QLGLEQRPPK TFKPNSWDSA  120
LSHQQINHQA ITAGSAQSMI MTSASFHSQP PGNNNRSFDM QRQQQHQQRQ QVHLSQDQQQ  180
CMMSRNSLDG GVMSVPYSMQ EEVVGAQVRT AAASDHVDMR GSSPASGVQE SCNTDVFSLE  240
GLSRLSPLSP TESIRGCKRK PEQQLQQLGG PMEHSKMHHG GMAPTATVKV PLAPAVAPSV  300
TKNSGHTQDH IMAERKRREK LSQRFIALSA VVPGLKKMDK ASVLGDAIKY VKTLQEKLRS  360
IEEQMPKKRV RSLSSSKKPL AVAIADKTGM QGTAAAVPPA GADHKVEAEV IDEEDDGPVP  420
EIEARAVDRN IMIRMHCDKR KGLLVKCLAE LERLKLVILH ANMLSFSSTS IDLTCSVQME  480
EGCETSSDDI VRCLQALYRT LDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13309364863Transcription factor MYC2
5gnj_B6e-13309364863Transcription factor MYC2
5gnj_E6e-13309364863Transcription factor MYC2
5gnj_F6e-13309364863Transcription factor MYC2
5gnj_G6e-13309364863Transcription factor MYC2
5gnj_I6e-13309364863Transcription factor MYC2
5gnj_M6e-13309364863Transcription factor MYC2
5gnj_N6e-13309364863Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313318ERKRRE
2314319RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-38bHLH family protein