PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0048s0095.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 778aa MW: 82947.2 Da PI: 6.1395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0048s0095.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.2	5.5e-17	555	601	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eYIk Lq Sphfalx0048s0095.2.p 555 VHNLSERRRRDRINEKMKSLQELIPNS-----NKTDKASMLDEAIEYIKTLQ 601 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.6E-20	548	610	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-20	549	610	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.489	551	600	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.09E-18	554	605	No hit	No description
Pfam	PF00010	1.9E-14	555	601	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-18	557	606	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MAWMDNGYIE NGQFEEMRDP INDGCNAQLQ QNYAFSWGVM GQEGMQDGVL PSKPSMMLEA 60 MVNGTSSSVT TAAAAAGSQA LPIKNFQEDE MISWLQDPPY DSLDQQYGGA GDFFGELPDA 120 NIQVFTDAFA AGQGITARAP RTQLSGHSGN SAANYALMNR VTNAESAMTL ATCKAAGLIR 180 QGAHGADAFR YSRTPQLGTR QLGSLPPPSS SSLVGLGQGN TENQIPVRTS SSSAATAASG 240 SLLAPMLPPK SKPVAAAAVT WNNQQVANTT SSTTGAMNFP VFARPAALIK ANLQSLNITS 300 ILPSNLMRFK LQQHGGGGGG HVNLDASTST SSSITELTTI GQQSDLERRY EFSRAQSELG 360 RMQGFQGSSR SSNLGVDSWS QMPSLVSRKE VVHAVSSAGE AAMDCRTSEP MDQDITCHPH 420 LSGATIVGSA VVAASDLGVL QSTSIPAEVQ EPTITSASAG PGAVQGGATS DLRVSQGITS 480 LPEVVQEPTI TSEFGGCSNI ALERAKETST ANKKKLLGAA QEVECPSGDG EDESLELKRP 540 ARGGGTTKRN RAAEVHNLSE RRRRDRINEK MKSLQELIPN SNKTDKASML DEAIEYIKTL 600 QLQLQMMSMR SGMNLPLMVL PRGIQHLQMP QMPQIPQMPQ MAMSMSVGMG MGMGMGMGSG 660 MGMGATGSGR GVMPVASAMG SVQHNNSNVA ASMMMEAHDS CLVNPNMMDS RNVHLAHQHP 720 TMQMQQQPMS MEMYNAYIMQ QHQQQQQQQQ QQQQQQQHYQ LQQEHHQSFT MAAGPPP*

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MAWMDNGYIE NGQFEEMRDP INDGCNAQLQ QNYAFSWGVM GQEGMQDGVL PSKPSMMLEA  60
MVNGTSSSVT TAAAAAGSQA LPIKNFQEDE MISWLQDPPY DSLDQQYGGA GDFFGELPDA  120
NIQVFTDAFA AGQGITARAP RTQLSGHSGN SAANYALMNR VTNAESAMTL ATCKAAGLIR  180
QGAHGADAFR YSRTPQLGTR QLGSLPPPSS SSLVGLGQGN TENQIPVRTS SSSAATAASG  240
SLLAPMLPPK SKPVAAAAVT WNNQQVANTT SSTTGAMNFP VFARPAALIK ANLQSLNITS  300
ILPSNLMRFK LQQHGGGGGG HVNLDASTST SSSITELTTI GQQSDLERRY EFSRAQSELG  360
RMQGFQGSSR SSNLGVDSWS QMPSLVSRKE VVHAVSSAGE AAMDCRTSEP MDQDITCHPH  420
LSGATIVGSA VVAASDLGVL QSTSIPAEVQ EPTITSASAG PGAVQGGATS DLRVSQGITS  480
LPEVVQEPTI TSEFGGCSNI ALERAKETST ANKKKLLGAA QEVECPSGDG EDESLELKRP  540
ARGGGTTKRN RAAEVHNLSE RRRRDRINEK MKSLQELIPN SNKTDKASML DEAIEYIKTL  600
QLQLQMMSMR SGMNLPLMVL PRGIQHLQMP QMPQIPQMPQ MAMSMSVGMG MGMGMGMGSG  660
MGMGATGSGR GVMPVASAMG SVQHNNSNVA ASMMMEAHDS CLVNPNMMDS RNVHLAHQHP  720
TMQMQQQPMS MEMYNAYIMQ QHQQQQQQQQ QQQQQQQHYQ LQQEHHQSFT MAAGPPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	559	564	ERRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-35	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0048s0095.2.p