PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0048s0095.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 778aa MW: 82947.2 Da PI: 6.1395 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.5e-17 | 555 | 601 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eYIk Lq Sphfalx0048s0095.1.p 555 VHNLSERRRRDRINEKMKSLQELIPNS-----NKTDKASMLDEAIEYIKTLQ 601 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-20 | 548 | 610 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-20 | 549 | 610 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.489 | 551 | 600 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.09E-18 | 554 | 605 | No hit | No description |
Pfam | PF00010 | 1.9E-14 | 555 | 601 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-18 | 557 | 606 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MAWMDNGYIE NGQFEEMRDP INDGCNAQLQ QNYAFSWGVM GQEGMQDGVL PSKPSMMLEA 60 MVNGTSSSVT TAAAAAGSQA LPIKNFQEDE MISWLQDPPY DSLDQQYGGA GDFFGELPDA 120 NIQVFTDAFA AGQGITARAP RTQLSGHSGN SAANYALMNR VTNAESAMTL ATCKAAGLIR 180 QGAHGADAFR YSRTPQLGTR QLGSLPPPSS SSLVGLGQGN TENQIPVRTS SSSAATAASG 240 SLLAPMLPPK SKPVAAAAVT WNNQQVANTT SSTTGAMNFP VFARPAALIK ANLQSLNITS 300 ILPSNLMRFK LQQHGGGGGG HVNLDASTST SSSITELTTI GQQSDLERRY EFSRAQSELG 360 RMQGFQGSSR SSNLGVDSWS QMPSLVSRKE VVHAVSSAGE AAMDCRTSEP MDQDITCHPH 420 LSGATIVGSA VVAASDLGVL QSTSIPAEVQ EPTITSASAG PGAVQGGATS DLRVSQGITS 480 LPEVVQEPTI TSEFGGCSNI ALERAKETST ANKKKLLGAA QEVECPSGDG EDESLELKRP 540 ARGGGTTKRN RAAEVHNLSE RRRRDRINEK MKSLQELIPN SNKTDKASML DEAIEYIKTL 600 QLQLQMMSMR SGMNLPLMVL PRGIQHLQMP QMPQIPQMPQ MAMSMSVGMG MGMGMGMGSG 660 MGMGATGSGR GVMPVASAMG SVQHNNSNVA ASMMMEAHDS CLVNPNMMDS RNVHLAHQHP 720 TMQMQQQPMS MEMYNAYIMQ QHQQQQQQQQ QQQQQQQHYQ LQQEHHQSFT MAAGPPP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 559 | 564 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-35 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0048s0095.1.p |