PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0048s0086.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 359aa MW: 40211.4 Da PI: 6.9937

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0048s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.6	1.9e-14	38	138	2	79
trihelix 2 WtkqevlaLiearr..................emeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkr 60 Wt +e+ +Li+a++ + +++ +W++v +++++ g+ r+++qC +kw+nl ++ Sphfalx0048s0086.1.p 38 WTLHETFVLIAAKKldddrrlkllragdqsklQ--------LhgrksrprggadQQQVRWKWVENYCWKFGCLRNQNQCSDKWDNLLRD 118 ************7666666555555554441........0444445555556******************************* PP trihelix 61 ykkikegekkr.tsessstc 79 ykk+++ e+ r t+e s + Sphfalx0048s0086.1.p 119 YKKVRDYEELRnTPEPISYW 138 *******98445555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-9	37	141	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAEYAADSNQ QLLQQIAFGE VQVRPEASDR TECRKGSWTL HETFVLIAAK KLDDDRRLKL 60 LRAGDQSKLQ LHGRKSRPRG GADQQQVRWK WVENYCWKFG CLRNQNQCSD KWDNLLRDYK 120 KVRDYEELRN TPEPISYWKM EKHERKEKGL PSNLLKEVYC ALQGVVADHS RFPARKLLLP 180 TAFDQISAPA PGPPRQHFSP ILQMPATSLH SPMQEQHAHE QLSSEPDPTL SEEGDESSFE 240 DAEADQIAAG AAAAAKRRKL HTNNVELEGS AAAIAPSMFK STVEIMQTLL ACEDKKDRRH 300 RDLLGVEERK LHIEEAKTEI SRAGVAGLIT AVNTLASAIL LLAADTSTTA AALDHHIP*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAEYAADSNQ QLLQQIAFGE VQVRPEASDR TECRKGSWTL HETFVLIAAK KLDDDRRLKL  60
LRAGDQSKLQ LHGRKSRPRG GADQQQVRWK WVENYCWKFG CLRNQNQCSD KWDNLLRDYK  120
KVRDYEELRN TPEPISYWKM EKHERKEKGL PSNLLKEVYC ALQGVVADHS RFPARKLLLP  180
TAFDQISAPA PGPPRQHFSP ILQMPATSLH SPMQEQHAHE QLSSEPDPTL SEEGDESSFE  240
DAEADQIAAG AAAAAKRRKL HTNNVELEGS AAAIAPSMFK STVEIMQTLL ACEDKKDRRH  300
RDLLGVEERK LHIEEAKTEI SRAGVAGLIT AVNTLASAIL LLAADTSTTA AALDHHIP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-49	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0048s0086.1.p