PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0048s0074.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 774aa MW: 83131.7 Da PI: 6.3419

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0048s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.6e-08	661	702	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L+ l+P+ K++ +++LekA++Y++ L Sphfalx0048s0074.1.p 661 AARVRRERISDRLKALQLLVPNG-----DKVDMVTMLEKAINYVQCL 702 6799****************5.....5*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.61E-8	650	707	No hit	No description
PROSITE profile	PS50888	13.891	653	702	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-12	657	716	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-10	658	712	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-9	659	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-5	661	702	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MEDALLWQVC DQEVHHDASI LQPHMGIMFG SVSASCHTSH ASNISHFAEC CLAPPPPPPT 60 LPPPPPPPPA QLPFASQWGL QYESWVSKRG VDELHDMITL RPSTSSAGGG DDDDTTVVAV 120 DRALILQGTP LPQAAPGGAI INFGCNLDGQ QQADVGGINT RASRGHHGFY SNQAMSIAGH 180 SAQLDSYTES AFVGPDMQGS TMLWPTENPI IRQDKLSSSM NTPMIDGYYL QTLNSALSPS 240 FNYNTALQGT HAEESIMESS LGSVVFGHKV WNSRTDPPFG MAADHSLITN PMGSLFHSIS 300 AGSSLMQYLQ NRCEAAQGSS LMYQLQQNKC EAQGSSLMHQ LQNKCEAQVT LKLPQASQVS 360 GTEEAGGSSP GACSIVEELF LQRQKPGSNL VLASSLPSPL LMKKKKNIGS AAAATATLEL 420 VQNINTTVTN VAQKQDRNNV VSVVHGASFP YLSSSATIAA ESHDNTMKAL SGGGHTWLIK 480 GSEETLSSDT SSNTAISNST KMVFSEEAEQ FDAHFQIRKD PIVEPSTVTK WSPNVVTVAS 540 PLEEKCALPP PLAVMKCALP RHNNNSGHWV AAASNTTKRP VWPADNEDNN ISGFLHKKPI 600 AKWPVAAVEG CSRLEAVSTL AHHTVVTQNK TSNACTLGPA LNTNLKPRAR QGSANDPQSI 660 AARVRRERIS DRLKALQLLV PNGDKVDMVT MLEKAINYVQ CLELQIRMLK DDALWPKALG 720 VLPNTLQELL ELAGPEFAAL REEEVQNKKK EKSKHINKED PLGSPAPSSN NTE*

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MEDALLWQVC DQEVHHDASI LQPHMGIMFG SVSASCHTSH ASNISHFAEC CLAPPPPPPT  60
LPPPPPPPPA QLPFASQWGL QYESWVSKRG VDELHDMITL RPSTSSAGGG DDDDTTVVAV  120
DRALILQGTP LPQAAPGGAI INFGCNLDGQ QQADVGGINT RASRGHHGFY SNQAMSIAGH  180
SAQLDSYTES AFVGPDMQGS TMLWPTENPI IRQDKLSSSM NTPMIDGYYL QTLNSALSPS  240
FNYNTALQGT HAEESIMESS LGSVVFGHKV WNSRTDPPFG MAADHSLITN PMGSLFHSIS  300
AGSSLMQYLQ NRCEAAQGSS LMYQLQQNKC EAQGSSLMHQ LQNKCEAQVT LKLPQASQVS  360
GTEEAGGSSP GACSIVEELF LQRQKPGSNL VLASSLPSPL LMKKKKNIGS AAAATATLEL  420
VQNINTTVTN VAQKQDRNNV VSVVHGASFP YLSSSATIAA ESHDNTMKAL SGGGHTWLIK  480
GSEETLSSDT SSNTAISNST KMVFSEEAEQ FDAHFQIRKD PIVEPSTVTK WSPNVVTVAS  540
PLEEKCALPP PLAVMKCALP RHNNNSGHWV AAASNTTKRP VWPADNEDNN ISGFLHKKPI  600
AKWPVAAVEG CSRLEAVSTL AHHTVVTQNK TSNACTLGPA LNTNLKPRAR QGSANDPQSI  660
AARVRRERIS DRLKALQLLV PNGDKVDMVT MLEKAINYVQ CLELQIRMLK DDALWPKALG  720
VLPNTLQELL ELAGPEFAAL REEEVQNKKK EKSKHINKED PLGSPAPSSN NTE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-24	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Sphfalx0048s0074.1.p