PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0048s0033.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 1046aa MW: 114149 Da PI: 5.1677 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 405 | 427 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k F +L H +tH Sphfalx0048s0033.2.p 405 YMCKICDKEFDGAKSLSLHKKTH 427 89********************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.0006 | 471 | 490 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H+r Sphfalx0048s0033.2.p 471 TCTECGKEFGSWKALFGHMR 490 6******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.29E-9 | 405 | 427 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 405 | 427 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.094 | 405 | 429 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0063 | 405 | 427 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 407 | 427 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.29E-9 | 465 | 492 | No hit | No description |
PROSITE profile | PS50157 | 9.93 | 470 | 497 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0064 | 470 | 492 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-7 | 472 | 494 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 472 | 492 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 723 | 750 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.0E-6 | 723 | 745 | No hit | No description |
Pfam | PF13912 | 7.2E-8 | 723 | 747 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 723 | 745 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 725 | 745 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.0E-6 | 822 | 849 | No hit | No description |
PROSITE profile | PS50157 | 9.702 | 827 | 854 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-12 | 827 | 851 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 827 | 849 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 829 | 849 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1046 aa Download sequence Send to blast |
MMDKSYGEEK RSSSMDGGVS VQLVTEEEEE DMMEEASTSP VQIIQGGGEN HHHYHLHQKT 60 TSPQCCSTCK NNSAGFLSSS LMKICSHCST NHHSQEEKSG TWPTTKTEGG GGGGGGNGGG 120 GEIIIEGEED GVANGVISGG GATIVVLDDQ GPGSLCSDAE VEELLLPPRA GILSSVEEED 180 AAAAAGTAEL IRCKSTVVDQ DEIHAKNSMC SQEEEEEQKN SMSHLCQLYK RGELGFGRGP 240 LGAGSMMQQQ QQSHNNNNKQ LNSITMDHEN HNASSFSVEV GQEKEQQLSS SIGQVSQLRN 300 LHVDSGVSDP DSFKDETTSP LPCCPQSQGV ESSCIQSVSR QLNFQQVEFK DHNKAGSPPS 360 LVAISSGAAL SCEDEDLWDE HEEDAGSTKV SSSLEENNNG STHDYMCKIC DKEFDGAKSL 420 SLHKKTHPQY TLRRNPKRSR RFIDQDYAVE VSAAAAPAKK MSTMSEDKVK TCTECGKEFG 480 SWKALFGHMR CHPEREWRGI QPPDTITHQH GRMNNNASHP PSRRKKPPPN VIVTADSDSE 540 SETESRRGSR KASDNESDTE SIEAAYMNGD MQQSVRNWQK GKRTKRLRQS VRSLQAVTSY 600 APENSEAATT PTETRHQREI IDALMLLKAV ESERKRSALT APPQEPQVTD KEDVVLHHWS 660 GGKAEEVEQE DHVSRSERNC HKEDKRSAVV KKEAEDAYPS EEDEDGANEF ETGMQGVGPR 720 MKYECTTCKR IFKSHQALGG HRASHKKVKG CYARTNVGEG GAQDQSPEED ITDDEAMNTE 780 NIELLPPYIQ DASHTSEQED HKPCHYLAVA KDDNEEMFSI ARKSKGHECS ICHRVFNSGQ 840 ALGGHKRCHW GGTTASTSAP SEPYSGIRTN NQQQMSALPT TLAGHHQVSN PKREVLEREL 900 DLNMPAPESD DFVEQVGSSS AHILPPSLGH SNSYIPLLSS PFFSMAKKYA SSSPFQDSVE 960 KRHHLPNNSR DQYGFQAKDM PSSVDDNTPE QATASGGCKS ETGSLGAGDQ GLDNLQNFGQ 1020 FGQSLKATCH NADVGPEPQV PLLLD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-21 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0048s0033.2.p |