PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0047s0068.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 349aa MW: 39257.8 Da PI: 6.513 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.7 | 1.8e-14 | 83 | 169 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ + +Li a re+ ++l r++ + ++W+evsk + ++ ++++qC+ k ++l+kry+++k+ ++ ++p+fd l Sphfalx0047s0068.2.p 83 EWSEAATSVLISAFREKFHALDRSNFRSKDWAEVSKIVnaqcVNEKSPKTQEQCRMKVDSLKKRYRQEKDKLAGN---IPCKWPWFDVL 168 5***********************************9966666677778889*********************85...55679***988 PP trihelix 86 e 86 + Sphfalx0047s0068.2.p 169 D 169 7 PP | |||||||
2 | FLO_LFY | 27.5 | 4.2e-09 | 261 | 321 | 65 | 129 |
FLO_LFY 65 vakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkr 129 + k+a +tv tL++m d+eld++m+ e f +d Ger G+kaa+ + +r+l +e++e + Sphfalx0047s0068.2.p 261 AKKLASSKYTVATLLEMSDRELDEIMT---EEF-IDAARGERRGFKAAIWSRKRKLAQESEEDME 321 56889999****************996...445.78999*****************997644433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-19 | 82 | 171 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEDDSSGGGG DGGELVGDAH NNHHHHHHHH LQQHHDIIGT SGSHELLQQQ QQPDHQDSEF 60 EEEHVLSKIE SPHKGPGREP ATEWSEAATS VLISAFREKF HALDRSNFRS KDWAEVSKIV 120 NAQCVNEKSP KTQEQCRMKV DSLKKRYRQE KDKLAGNIPC KWPWFDVLDD LIGGSPKQSR 180 IGSARKQARF LCSPPPARPL SVVHTPYFGA LSPSVYLKKK LTRVVSLQDG LDQDLMAGSL 240 EDNIEALLHN FLEEETARDF AKKLASSKYT VATLLEMSDR ELDEIMTEEF IDAARGERRG 300 FKAAIWSRKR KLAQESEEDM ELANTSGSML EISDNFAKKE KKSGSFVR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379771.1 | 1e-152 | uncharacterized protein LOC112284305 | ||||
TrEMBL | A0A2K1KA39 | 1e-151 | A0A2K1KA39_PHYPA; Uncharacterized protein | ||||
STRING | PP1S136_122V6.1 | 1e-152 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 4e-22 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0047s0068.2.p |