PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0047s0045.5.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 499aa    MW: 51783.4 Da    PI: 6.12
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0047s0045.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11291336555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Sphfalx0047s0045.5.p 291 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 336
                           99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-13284340No hitNo description
SuperFamilySSF474597.46E-17284345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.453286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16288345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-14292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDEFLEDMFA MPWDYNAGQG AMMMERAGTG AAMAGVEAAS NINHNSNIGG GSSMAAATQQ  60
QQKMFSMPLI QQQPRLLNNN NGSGALSGVN QAQLVSSQAS QLSSQQQQQG KEMRSEVCGM  120
EGVSVATQEP GSGSSTGLQM NNAAGLQQQQ QGGSLTGSAS VGSSGSEDSG GQLGRGDHSP  180
SPPTALTWQQ QQQPPYVGAV PPSLPMSLAQ AKVENILGRG EFNSHNAQML GKRFREDEEG  240
LLQENHSGIT GSGPTSAPSG QGFPGSSQQG LPTVGVRPRV RARRGQATDP HSIAERLRRE  300
RIAERMKALQ ELVPNSNKTD KASMLDEIID YVKFLQLQVK ILSMSRLGGA GAVASTASDH  360
PAEGSNPAAP TISRSLGTPT PVQDGIALTE RQVTRLMEDD MGSAMQYLQS KGLCLMPIAL  420
ATAISTTNSR GSHTATVGAG DRQKATAAGS NGGLAADGLV SEHSSKDNNR EVESTNGTTT  480
SMAIAKAPKG EGKPSDGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394844.11e-105transcription factor bHLH85-like isoform X2
TrEMBLA0A2K1JI031e-104A0A2K1JI03_PHYPA; Uncharacterized protein
STRINGPP1S209_22V6.21e-105(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-47LJRHL1-like 1