PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0047s0045.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 500aa MW: 51854.5 Da PI: 6.12 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.2e-11 | 292 | 337 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq Sphfalx0047s0045.2.p 292 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 337 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-17 | 285 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.88E-13 | 285 | 341 | No hit | No description |
PROSITE profile | PS50888 | 17.453 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 289 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-9 | 292 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-14 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MDEFLEDMFA MPWDYNAGQG AMMMERAGTG AAMAGVEAAS NINHNSNIGG GSSMAAATQQ 60 QQKMFSMPLI QQQPRLLNNN NGSGALSGVN QAQLVSSQAS QLSSQQQQQA GKEMRSEVCG 120 MEGVSVATQE PGSGSSTGLQ MNNAAGLQQQ QQGGSLTGSA SVGSSGSEDS GGQLGRGDHS 180 PSPPTALTWQ QQQQPPYVGA VPPSLPMSLA QAKVENILGR GEFNSHNAQM LGKRFREDEE 240 GLLQENHSGI TGSGPTSAPS GQGFPGSSQQ GLPTVGVRPR VRARRGQATD PHSIAERLRR 300 ERIAERMKAL QELVPNSNKT DKASMLDEII DYVKFLQLQV KILSMSRLGG AGAVASTASD 360 HPAEGSNPAA PTISRSLGTP TPVQDGIALT ERQVTRLMED DMGSAMQYLQ SKGLCLMPIA 420 LATAISTTNS RGSHTATVGA GDRQKATAAG SNGGLAADGL VSEHSSKDNN REVESTNGTT 480 TSMAIAKAPK GEGKPSDGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 301 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394844.1 | 1e-105 | transcription factor bHLH85-like isoform X2 | ||||
TrEMBL | A0A2K1JI03 | 1e-104 | A0A2K1JI03_PHYPA; Uncharacterized protein | ||||
STRING | PP1S209_22V6.2 | 1e-105 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 6e-47 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0047s0045.2.p |